Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1067 ATGCGAGTGTTTGGGAACCTGAATGGAGGCGATCGGCCAACGGCATTTCCGTGGATCCGAAGTTACAGTGCTCGCAAACCAGGCGCGTCGAGTTTCGGTGGCGTTGAAAGAGTAAGAGACGCTAACGACCGTTGGCGACCTGCTCCAGCTACAGTTCCCAAACTGGAAAAACTACAAATATCGAAACAGTTAGCTGCATCATCTTGTACCCTcgaagaaaaggataaaatttcaCCTATTCAGAGACTTGACAATGGTGGCACGTTAGCAATTCTAACAAGCAGACTTCGTGTCAATCATTTCCCTGTTAAGTTTGATCCAGAGAGTATAATAATGCATTATAGTGTTGGTGTCAAACCTATGGTTTCTTCAAAACTTGGCCAGCCTCAGAGATTATCAAAGTCTGATCTATCCATGATCAGAGAGAAACTGTTTTCTGTTGATCCGGAGAGGTTGCCCTTGGAGATGACTGCACATGATGGcgcaaaaaatatttatagtgcAGTACAATTACCCGAAGAAACCTTTACCGTGGAGATCTCTGAAGGAGAGGATGAAAAGACCATTTCATATAGTGTTACCTTAACTCTTGTTAATAAACTCAGGCTTCGCAAGTTAATGGACTATCTTAGTGGGCATAACCTCTCCATTCCTAGGGATATTTTACAAGGGATGGATGTGGTGGTGAAAGAGAATCCCGCTAGACGCACTATTTCTGTTGGACGACACTTCTATCCCACAAATCCTCCTGTAGTAATGAAGGATCTTCACCACGGGATAATTGCTGTTGGGGGTTTTCAGCATAGTTTAAAACCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCAGTATTGGCTTTTCGAAAGCGAATGTCAGTCTTGGATTTCTTGCATGAGCGTATTGATAACTTTAAATTGGATGAATTCGAAAAATTCAGCAAACTCGTTGAGGAGGCACTTATTGGATTGAAAGTTAATGTGACTCATCGTAAATGCAAACGGAAATACATTATATCAAGATTAACACCTATGATTACAACGTATGTCACTTTTCCCATTGACAATACCGGTGGCTGGAGTCCCTCAAAGGATGCTAGTCTTGTTACCTTTTTTAAAGACAAATATGGCAAGGACATTGTGTACAAAGATATACCTTGTCTAGATTTAgggaaaaataagaagaagaactaTGTACCCATGGAATTCTGTGTTTTAGTTGAGGGCCAAAGATATCCCAAAGAGCGTCTGGATAGTATTTCTGCAAATACATTGAAAGCAATGTCACTAGCTCACCCAAATGAGAGGGAGTGTGCAATACACAAGATGGTGCAGTCTAGTGATGGACCTTGCGGTGGTGatcttattcaaaattttggaaTGAGTGTCAACACAGCCATGACAACTATTGTAGGACGTGTAATTGGTCCTCCGGATTGA 1440 0.4 MRVFGNLNGGDRPTAFPWIRSYSARKPGASSFGGVERVRDANDRWRPAPATVPKLEKLQISKQLAASSCTLEEKDKISPIQRLDNGGTLAILTSRLRVNHFPVKFDPESIIMHYSVGVKPMVSSKLGQPQRLSKSDLSMIREKLFSVDPERLPLEMTAHDGAKNIYSAVQLPEETFTVEISEGEDEKTISYSVTLTLVNKLRLRKLMDYLSGHNLSIPRDILQGMDVVVKENPARRTISVGRHFYPTNPPVVMKDLHHGIIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKRMSVLDFLHERIDNFKLDEFEKFSKLVEEALIGLKVNVTHRKCKRKYIISRLTPMITTYVTFPIDNTGGWSPSKDASLVTFFKDKYGKDIVYKDIPCLDLGKNKKKNYVPMEFCVLVEGQRYPKERLDSISANTLKAMSLAHPNERECAIHKMVQSSDGPCGGDLIQNFGMSVNTAMTTIVGRVIGPPD 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1067 479 Pfam N-terminal domain of argonaute 95 229 IPR032474 -
Ssu1g1067 479 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 13 479 - -
Ssu1g1067 479 SUPERFAMILY PAZ domain 287 446 IPR036085 GO:0005515
Ssu1g1067 479 CDD PAZ_argonaute_like 292 407 - -
Ssu1g1067 479 Pfam Argonaute linker 1 domain 239 290 IPR014811 -
Ssu1g1067 479 SMART PAZ_2_a_3 292 425 IPR003100 GO:0005515
Ssu1g1067 479 Pfam PAZ domain 302 423 IPR003100 GO:0005515
Ssu1g1067 479 SMART DUF1785_2 238 291 IPR014811 -
Ssu1g1067 479 ProSiteProfiles PAZ domain profile. 292 408 IPR003100 GO:0005515
Ssu1g1067 479 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 13 479 - -
Ssu1g1067 479 Gene3D paz domain 286 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1067 Ssu-Chr1 22976234 22979893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1067 96 478 Eukaryotic Initiation Factors Gene Family AT1G48410 32.915 1.86e-49 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1067 K11593 - gmx:100783571 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1067 1 22976234 22979893 Ssu1g1067 1 22976234 22979893 ECH