Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1066 ATGGTGGAAGGTAAACCAGTTGAGCATTGGGGCATTCTTGATTTCACTAGTTTTGGGTCATATAAGTACAAATTAAGAGGCAAGGAATTCATGCAAAAGCTTAAAGGTAAATACAAGAAATTGGGTATATACATGCAGGAGCCAATTTGGTATGAAGAATCTTCAATGAAGATACTTGCAAGTTATGATTTGCTATCTGAATTACTTGAAAAAGttaacaacacttgtaaatatAACCAAGCCCACCTGCAATTTCTTTTCTGTGTAATGGCTAAAAAAAGTCCTGGTTATAAGTACCTCAAGTGGATTTCTGAGACCAAGCTTGGGATAGTGACACAATGCTGCTTGTCTAATAGTGCTAACGAAGGGGAGgacaaattttatactaatctGGCTCTCAAGATCAATGCCAAGCTTGGAGGCAGTAACGTGGAGCTCAGTAAAGGGCTTCCTTACTTTGAGGGTGAAGGACATGTTATGTTTTTAGGGGCTGATGTCAACCATCCTGGTTATCAGGACACCAGGAGTCCATCAATTGCTGCTGTGGTTGCTACTGTTAATTGGCCTGCTGCAAATCGTTATGCAGCACGTGTTTGCCCACAATACAATCGAAGTGAGAAAATATTGAACTTTAGGGAGGTTTGTCTTGAGCTTGTTGCATGTTATAGGAGGATGAATGGAGTTAGGCCAGAAAGAATTGTTATTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGACATGGTTCTTAATGACGAGCTACAAGATTTGAAGAGAGTATTTCAAAGAGTAAATTACTTTCCAACAATCACTCTTATTGTAGCACAAAAATGA 831 0.3815 MVEGKPVEHWGILDFTSFGSYKYKLRGKEFMQKLKGKYKKLGIYMQEPIWYEESSMKILASYDLLSELLEKVNNTCKYNQAHLQFLFCVMAKKSPGYKYLKWISETKLGIVTQCCLSNSANEGEDKFYTNLALKINAKLGGSNVELSKGLPYFEGEGHVMFLGADVNHPGYQDTRSPSIAAVVATVNWPAANRYAARVCPQYNRSEKILNFREVCLELVACYRRMNGVRPERIVIFRDGVSEYQFDMVLNDELQDLKRVFQRVNYFPTITLIVAQK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1066 276 SMART Piwi_a_2 85 276 IPR003165 GO:0003676
Ssu1g1066 276 ProSiteProfiles Piwi domain profile. 85 276 IPR003165 GO:0003676
Ssu1g1066 276 Pfam Piwi domain 85 276 IPR003165 GO:0003676
Ssu1g1066 276 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 276 - -
Ssu1g1066 276 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 1 276 - -
Ssu1g1066 276 SUPERFAMILY Ribonuclease H-like 79 276 IPR012337 -
Ssu1g1066 276 Gene3D - 1 146 - -
Ssu1g1066 276 Gene3D - 155 276 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1066 Ssu-Chr1 22975323 22976153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1066 58 276 Eukaryotic Initiation Factors Gene Family AT1G48410 37.398 2.17e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1066 K11593 - gmx:100783571 506.908