Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1064 ATGAGGGATCAGGGTGTTTTAGGTGTTAATGTTgggagagaggaagaggaggatgaGTTTTGCAGTTGTTGTGGAGATGAAGAAGATGAGGAAGTGTGGAAAGAGACTGAGGAGCCTGTGGTGGAAGGGTTGAAGAAGGATGAGCTTGATGAATTTTCAGTGAAAATGTTCTTCAAGGGGTTGTCAATGGCTGGGGTTGGAAATGCGAGTTCTGGGTTTTCTGGGATTGGAGTGGTCATGGAAAGGTCACCAGGTCTTCCTGCTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCGGAGGAGTCAGTGGTTGACTATTTGGCACTGTTGGATGGCTTGCTGGAAGCTGTGCAGAACAAGATCCGCAGGGTTTATGCTTTCACAGATTCTGAGTTGTTGCAGGATCAGATAACATTTGGGAAAAAATTGGAGATGCCTCTTTTGATGGCACTGAGAGAAAGGATTCTGGAACTTGCCaataattttgaagaatttgtTTTGAAGCTTATACCCTGTACTGATCTTGAGCAGCCGCTGCATTTGGCCAAAGTAGCTATTGGACTTGTCACTTTCCCTGTTAATGGTGAGAGATTACTTAAGAACTGTTCTATCTGCTGTGATGACAAACCAGTGCCAATTATGATTACCTTGAAATGTTCGCACACATTCTGTTCACATTGCTTGAGGGCCTATGCTGATGGTAAAGTACAATCTTGTCAAGTCCCTATAAGATGCCCTCAACCAGGATGCAAGTATTTCATCTCTGTAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCCTTTGAATCATTGGAGAAAGCCCTTTCAGATGCAAATATTAACCATTCTGATAGAATTTATTGTCCGTTTCCAAATTGCTCTGTTCTCCTTGATACTCATGAATGTTTATCAGCTACGGCCAGTTCATCTAGTCAGTCTGACAATTCTTGTATTGAGTGTCCTGTTTGTAAGAGGTTTATCTGTGTGGACTGTAAGGTTCCTTGGCATTCTTCTATGAGCTGTGTAGAATACCAGAATCTGCCAGAGGAGGAGAGAGATGCTTCTGACATTACCTTGCATCGTCTTGCTCAGAACAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAATGATTGAGCGTACTCAAGGCTGTTACCACATGAGATGCTTGTGTGGTCATGAGTTCTGCTATTCATGTGGTGCTGAATACGAAGACCGGCGGCAGACATGTCAGTGTGCATATTGGGATGAAGATAACTCTGAAGACTCTGTGGCGCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAATTCTCTCTCCATGATCGTGGATGCATACTCAGACCAAGAACGATCGCAGCTTGCGCTTATTCAAAGGTTCCTAGCCGGGGGTTTCAGTCTCAGTGACCATAATCCTTACCAATCTCCTCCCCGCTGTACGGACTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGACAACTACTATGAAGATTACATTCATCAATGA 1554 0.4286 MRDQGVLGVNVGREEEEDEFCSCCGDEEDEEVWKETEEPVVEGLKKDELDEFSVKMFFKGLSMAGVGNASSGFSGIGVVMERSPGLPAIRVQKKLDFYAEESVVDYLALLDGLLEAVQNKIRRVYAFTDSELLQDQITFGKKLEMPLLMALRERILELANNFEEFVLKLIPCTDLEQPLHLAKVAIGLVTFPVNGERLLKNCSICCDDKPVPIMITLKCSHTFCSHCLRAYADGKVQSCQVPIRCPQPGCKYFISVTECRSFLPFTSFESLEKALSDANINHSDRIYCPFPNCSVLLDTHECLSATASSSSQSDNSCIECPVCKRFICVDCKVPWHSSMSCVEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIERTQGCYHMRCLCGHEFCYSCGAEYEDRRQTCQCAYWDEDNSEDSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYIHQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1064 517 Pfam Reverse transcriptase-like 67 171 IPR002156 GO:0003676|GO:0004523
Ssu1g1064 517 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 515 IPR031127 GO:0004842|GO:0016567
Ssu1g1064 517 Gene3D - 339 464 - -
Ssu1g1064 517 SUPERFAMILY RING/U-box 354 418 - -
Ssu1g1064 517 SUPERFAMILY Ribonuclease H-like 70 171 IPR012337 -
Ssu1g1064 517 Pfam IBR domain, a half RING-finger domain 277 341 IPR002867 -
Ssu1g1064 517 Pfam IBR domain, a half RING-finger domain 361 410 IPR002867 -
Ssu1g1064 517 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Ssu1g1064 517 SUPERFAMILY RING/U-box 201 276 - -
Ssu1g1064 517 ProSiteProfiles Zinc finger RING-type profile. 202 246 IPR001841 -
Ssu1g1064 517 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 515 - -
Ssu1g1064 517 Gene3D - 54 188 IPR036397 GO:0003676
Ssu1g1064 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 284 IPR013083 -
Ssu1g1064 517 ProSiteProfiles TRIAD supradomain profile. 198 416 IPR044066 -
Ssu1g1064 517 SMART ibrneu5 269 341 IPR002867 -
Ssu1g1064 517 SMART ibrneu5 351 410 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1064 Ssu-Chr1 22927017 22932267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1064 30 401 C3H Transcription Factor Family AT2G19610 24.936 4.71e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1064 - - gmx:100783040 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1064 1 22927017 22932267 Ssu1g1064 1 22927017 22932267 ECH