Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1058 ATGATTGACGATACCATGTGTTCTCCAAACGACAAGGACTTGGCGCTGAGTCCTAATCTTGATATCACGATAGATGATGATTCACCAAACAGTGAGCAACTACTTGAGGTTGAGGATGAAGGCAATGAGCTTGAGAATGAATGTGAACAATTGTTTGAGATTGATGGAAGTGAACATGAAAATGGGACGGATGAAAGAGCAGTAGTTGATAGCCAAAGTGGAGAATCTCAAGGGAAAGACTGCCCCCTACCAGTTGTGGGAATGGAGTTTGATACTTATGATGATGCGTATAACTATTACAATACCTATGCCAAGAAAATTGGATTTGCTATTCGGGTTAAATCTTCATGGACCAAACGTAACAGCAAAGAGAAGCGTGGTGCTGTGCTGTGCTGCAACTGTGAGGGTTTCAAAACAACCAAAGAAGCAAATAGTCATAGGAAAGAAACAAGAACAGGCTGTCTAGCCATGATTAGATTGAGATTAGTGGAATCGAACAGGTGGAGAGTTGATGAAGTTAAGCTTGAGCATAACCATTCATTTGATCCTGAAAGAGCACAAAACTCTAAATCACACAAGAGGATGGACAGTAGGGCCAAAAGAAAAGTTGAGCCAAGTCTAGATGTTGAAGTAAGAACAATCAAGTTATATAGAATGCCTGTTGTAGATGCTTCAGGTTATGGAAGCTCAAATTCTACTGAAGGAGGAACTACCAACAACATTAGTTGTTCCAGGCGTTTGAAACTTAAAAAAGGTGATCCAGAACTTGTTTCAAATTACTTCTGCCGCATTCAATTGATGAATCCTAACTTTTTCTATGTGATGGATCTGAATGATGATGGACAACTGAGGAATGTATTTTGGATTGATTCTAGATCTAGGGCTGCTTATAGTTATTTTGGTGATGTGGTTGCATTTGACTCAACGTGTTTGTCAAACAATTATGAGATTCCACTTGTTGCATTTGTTGGTGTTAATCACCATGGGAAATCTGTTTTGTTAGGATGTGGTCTGCTTGCAGACGAGacatttgaaacatatatttggTTATTTAGGGCATGGCTTACATGTATGACCGGTCGCCCTCCACAAACTATTATCACAAACCAGTGTAAGGCCATGCAAAGTGCAATTGCAGAGGTTTTCCCGAGAGCTCACCATAGAATTTGTCTATCGCAAGTCATGCAGAGCATTCTTGGGTGTTTTGTACAGTTTCAGGAGTATGAAGCATTTCAGATGGCGCTGACTAAAGTGATATATGACTCTAAAACAGTAGATGAATTTGAAAGGGCTTGGGATGATCTAACCCAGCATTTTGGAATAAGAAATCACGAAAAGCTCCAAACCTTACATGAGGAACGAGAGCATTGGGCTCCAGTGTACTCCAAGGACACATTTTTTGCAGGAATATCTGACTTTGAAAAGGGTGAGTCTGTGGTTCCCTTTTTTAAGGGTCACGTGCATCAACAAACTTCGTTGAaagaattttttgagatttatgAATTAGTTCAGCAAAAAAAGCATAAAACTGAAGTTCTTGATGATTTTGAGTCACGCGATTTGAGCCCATTACTGAAGACAAGATGCTACTATGAGTTGCAGCTCTCTAAATTGTACACAAATGCAGTATTCAGGAAGTTCCAAGATGAGGTGGTGATGATGTCCTCTTGTTTCAACATCACACAGACTCAAACAAGTGGGTCAATAGTGACGTACATGGTAAAAGAACGTGAAGGGGAAGAAGAACCTGTAAGAGATGCTAGGCATTTTGAAGTCATGTATGATAAAGCTGGAGCAGAAGTGCGCTGCATTTGTAGTTGCTTTAACTTCAAAGGCTACCTGTGCAGACATGCCTTGTATATCCTTAATTACAATGGTGTGGAGGAAATTCCATGTCAATACATTTTGTCAAGATGGAGGAAGGATTTTAAGCGTTTGTATGTACCTCATCTCAGTGCCGAAAATGTTGATATTAGCAACCCAGTTCAGTGTTTTGATCATTTGTACAGACGTGCCATGCAAGTTGTTGAAGAAGGGATGATATCCCAAGATCATTATATGCTTTCTTGGCAAGCATTTAAGGAGTCTTTGAATAAGATTCGCCTTGTAGCAGACaagattgaataa 2127 0.3921 MIDDTMCSPNDKDLALSPNLDITIDDDSPNSEQLLEVEDEGNELENECEQLFEIDGSEHENGTDERAVVDSQSGESQGKDCPLPVVGMEFDTYDDAYNYYNTYAKKIGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEANSHRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFDPERAQNSKSHKRMDSRAKRKVEPSLDVEVRTIKLYRMPVVDASGYGSSNSTEGGTTNNISCSRRLKLKKGDPELVSNYFCRIQLMNPNFFYVMDLNDDGQLRNVFWIDSRSRAAYSYFGDVVAFDSTCLSNNYEIPLVAFVGVNHHGKSVLLGCGLLADETFETYIWLFRAWLTCMTGRPPQTIITNQCKAMQSAIAEVFPRAHHRICLSQVMQSILGCFVQFQEYEAFQMALTKVIYDSKTVDEFERAWDDLTQHFGIRNHEKLQTLHEEREHWAPVYSKDTFFAGISDFEKGESVVPFFKGHVHQQTSLKEFFEIYELVQQKKHKTEVLDDFESRDLSPLLKTRCYYELQLSKLYTNAVFRKFQDEVVMMSSCFNITQTQTSGSIVTYMVKEREGEEEPVRDARHFEVMYDKAGAEVRCICSCFNFKGYLCRHALYILNYNGVEEIPCQYILSRWRKDFKRLYVPHLSAENVDISNPVQCFDHLYRRAMQVVEEGMISQDHYMLSWQAFKESLNKIRLVADKIE 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1058 708 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 31 705 - -
Ssu1g1058 708 Pfam MULE transposase domain 303 396 IPR018289 -
Ssu1g1058 708 MobiDBLite consensus disorder prediction 179 203 - -
Ssu1g1058 708 MobiDBLite consensus disorder prediction 55 80 - -
Ssu1g1058 708 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 31 705 IPR031052 GO:0006355
Ssu1g1058 708 Coils Coil 34 54 - -
Ssu1g1058 708 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g1058 708 Pfam FAR1 DNA-binding domain 98 182 IPR004330 -
Ssu1g1058 708 ProSiteProfiles Zinc finger SWIM-type profile. 590 626 IPR007527 GO:0008270
Ssu1g1058 708 SMART 26again6 601 628 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1058 Ssu-Chr1 22766221 22770373 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu1g1058 MULE 1.9e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1058 K17604 - gmx:100796448 1358.2