Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1057 ATGGAAGAGACCTCTCTCTGCTGCGAGCAATTGCCAGATGGGGAATGCATTGAGGTTCAGAAAGACGAAGATGGTGCACTGATCGAATTAGATTGTCAAAATGGTTTTTCTGAAGGGAGAAAGGAATTTGTTGCTCCTGCTGTTGGAATGGAGTTTGAGTCATATGATGATGCTTACAATTATTACATCTGCTATGCCAAGGACGTGGGGTTTCGTGTAAGGGTGAAGAACTCGTGGTTCAAGCGGAATAGCCGAGAAAAATACGGTGCAGTGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAATAAAGGACGTTAATCATTTGAGGAAGGAGACAAGAACTGGTTGTCCTGCGATGATAAGGATGAGGTTGGTGGAGTCTCAGAGATGGAGGGTACTTGAGGTTATGCTTGAACATAACCACATGTTAGGCGCTAAGATACACAGGTCGGTTAAGAAGATGGGAACTGGGATGAAGAGGAAGTTGCTGCCTAGTTCTGATGCTGAGGGGCAAACAATTAAGTTGTATCGTGCACTTGTGATAGATGCAGGAGGTAATGGAAATTCAAACTCCAGCGCAAGAGATGACAGAACTTTCTGTGAGTTTTCTAATAAGTTGAACCTTAGAAAAGGGGACACACAGGCCATTTATAATTTCCTCTGCCGGATGCAATTGACTAATCCAAACTTCTTTTACTTGATGGATTTCAATGATGAAGGGCATTTGAGGAATGCATTCTGGGTTGATGCTAGGTCCAGGGCTGCGTGTGGTTATTTTGgcgatgttatttattttgacaacACTTATGtgtcaaataaatttgaaatcccTCTTGTGACTTTTGTAGGAATAAATCACCATGGTCAATCAGTGTTGTTAGGCTGTGGCCTGCTTGCAGGTGAAACAACAGAGTCTTATACATGGTTGTTTAGGACATGGGTTAAATGTATGTCGGGTTGTTCTCCCCATACTATTGTTACTGATAGGTGCAAGGCTTTACAGAGTGCAATTGTAGAAGTTTTTCCTAGATCTTATCATTGTTTTGGCTTgtcattaattatgaaaaaagtaCCAGAAAAATTGGGAGGGTTGCACAACTATGATGCAATCTGGAAGACACTGATTAAAGCAGTTTATGAGACATTGAAAGTGATTGAGTTTGAAGCAGCATGGGGATTTATGATTCAACGTTTTGGAGTTAGTGATCATGAGTGGCTTTGTTCTCTATATGAAGATCGAGTTCGTTGGGCTCCAGTATATTTGAAGGACACATTTTTTGCTGGAATGTCTGCAGCTCGCCCTGGTGAGAGCATTAgtccttttttttatagatatgtGCACAAACAGACTCCTCTGAAGGAGTTTCTTGATAAGTACGAATTAGCTCTTCACAAGAAGCACAAGGAAGAATCTTTTGCAGATATTGAATCAAGGAGCTCAAGCCCCTTGCTGAAAACCAAATGTTCTTTTGAATTGCAGCTCTCCAGAATGTACACAAGAGATATGTTCAAGAAATTCCAGTTAGAAGTGGAAGAAATGTATTCTTGTTTTGGTACAACACAATTACATGTGGATGGCCCCATCATAATTTTCTTGGTCAAGGAGCGTGTTTTGATTGAGGGAAACAGACGGGATATTAAGGATTTTGAAGTTTTGTACAGTAGGACAGCAGGTGAAGTTCGTTGCATCTgtagttgttttaatttttatggatATCTATGTCGGCATGCACTGTGTGCGCTCAATTTTAATGGTGTTGAAGAGATACCTCACAAATACATTCTTTCGCGATGGAAGAAAGATTACAAGCGTCTTTATGTTCCTGATCACAGCTCTGGTAGTGCTGATGATACTGACCGCGTTCAATGGTCTAACCAGTTATTTAGAAGTGCCTTACAAGTGGTGGAGGAGGGGATACTTACTCTAGACCATTACAATGTAGCGTTACAATCTTTAGAAGAATCACTGAGTAAGGTTCATGATGTAGAACAGAGACAGGAGTAA 2004 0.3942 MEETSLCCEQLPDGECIEVQKDEDGALIELDCQNGFSEGRKEFVAPAVGMEFESYDDAYNYYICYAKDVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHMLGAKIHRSVKKMGTGMKRKLLPSSDAEGQTIKLYRALVIDAGGNGNSNSSARDDRTFCEFSNKLNLRKGDTQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNAFWVDARSRAACGYFGDVIYFDNTYVSNKFEIPLVTFVGINHHGQSVLLGCGLLAGETTESYTWLFRTWVKCMSGCSPHTIVTDRCKALQSAIVEVFPRSYHCFGLSLIMKKVPEKLGGLHNYDAIWKTLIKAVYETLKVIEFEAAWGFMIQRFGVSDHEWLCSLYEDRVRWAPVYLKDTFFAGMSAARPGESISPFFYRYVHKQTPLKEFLDKYELALHKKHKEESFADIESRSSSPLLKTKCSFELQLSRMYTRDMFKKFQLEVEEMYSCFGTTQLHVDGPIIIFLVKERVLIEGNRRDIKDFEVLYSRTAGEVRCICSCFNFYGYLCRHALCALNFNGVEEIPHKYILSRWKKDYKRLYVPDHSSGSADDTDRVQWSNQLFRSALQVVEEGILTLDHYNVALQSLEESLSKVHDVEQRQE 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1057 667 Pfam MULE transposase domain 262 356 IPR018289 -
Ssu1g1057 667 Pfam SWIM zinc finger 539 581 IPR007527 GO:0008270
Ssu1g1057 667 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 20 663 - -
Ssu1g1057 667 Pfam FAR1 DNA-binding domain 60 143 IPR004330 -
Ssu1g1057 667 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 20 663 IPR031052 GO:0006355
Ssu1g1057 667 ProSiteProfiles Zinc finger SWIM-type profile. 549 585 IPR007527 GO:0008270
Ssu1g1057 667 SMART 26again6 560 587 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1057 Ssu-Chr1 22759402 22761405 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu1g1057 MULE 2.9e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1057 K17604 - gmx:100796448 1280.77