Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1054 ATGGCTAACCAAACCCCTCACGACGAGGTCGTGTGCGTGACCGGCGCCAACGGTTTCATCGGCTCGTGGCTGGTCCGAACCCTCTTGGAGAAGCCCAACCCGCGCTACACCATCCACGCCGCCGTCTTCCCCGGCTCCGACGCCTCCCACCTCTTCGCCCTCCGCCCGGACGCCCGCTCCCGCGTCGCCGTCTTCCCCGCCGACCTCCTCGACGCCGCGGCGCTCTTCCGCGCCGTCGCCGGCTGCTCCGGCGTGTTCCACGTGGCGTCCCCCTGCACGCTCGGGGCCCCCGCGGACCCCAGCAGGGAGCTCCTCGAGCCCGCGGTGCGGGGCACCCTGAACGTCCTGGACGCCGCGAGGCGCGCGGGCGTGCGGCGCGTGGTGCTCACGTCCTCGATCTCCGCGATGGTGCCGAACCCCGCGTGGCCGGCGGGCCGGGCGGCGGACGAGGCGTCGTGGACGGACGTGGAGCACTGCAGGGCGCGGGGGAAGTGGTACCCGGTGGCGAAGACGGAGGCGGAGAGGGCGGCGCGGGGGTTCGAGGGCGTCGACGTAGTGGCGGTGCTGCCGGCGACGTGCCTGGGGCCGCTGCTGCAGCCGGAGTTGAACGCGAGCTCCGCCGTGCTGAGGGAGCTGATGATGGGGTCGAGGGAGACGCAGGAGTATCACTGGTTGGGTGCGGTGCATGTTAGGGACGTTGCCAAGGCTCATGTGTTGCTTTATGAAACCCCCACTGCTGCTGGTAGATATCTCTGCACCAATGGTATCTACCAGTTTTCTAGTTTTGCCGAAGTTGTCTCTGAATTGTACCCTGACTTCCCTATTCACAGGTTCCCAGCAGAAACACAACCTGGACTAACACCATGTAAAGATGCAGCAAGGAGACTAATAGACTTGGGCCTTGTCTTCACACCAATTCAAGATGCTGTGAGAGAAGCAGCGGAGAGCCTTATAGCTAAAGGCTTCCTGCAGCGCACACCCTCACAGAGGTAG 993 0.6546 MANQTPHDEVVCVTGANGFIGSWLVRTLLEKPNPRYTIHAAVFPGSDASHLFALRPDARSRVAVFPADLLDAAALFRAVAGCSGVFHVASPCTLGAPADPSRELLEPAVRGTLNVLDAARRAGVRRVVLTSSISAMVPNPAWPAGRAADEASWTDVEHCRARGKWYPVAKTEAERAARGFEGVDVVAVLPATCLGPLLQPELNASSAVLRELMMGSRETQEYHWLGAVHVRDVAKAHVLLYETPTAAGRYLCTNGIYQFSSFAEVVSELYPDFPIHRFPAETQPGLTPCKDAARRLIDLGLVFTPIQDAVREAAESLIAKGFLQRTPSQR 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1054 330 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 9 313 - -
Ssu1g1054 330 CDD FR_SDR_e 11 301 - -
Ssu1g1054 330 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 9 313 - -
Ssu1g1054 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 316 IPR036291 -
Ssu1g1054 330 Pfam NAD dependent epimerase/dehydratase family 11 246 IPR001509 -
Ssu1g1054 330 Gene3D - 2 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1054 Ssu-Chr1 22709239 22711672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1054 9 323 Monolignol Biosynthesis Gene Families AT2G02400 62.893 4.57e-155 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1054 - - gmx:100795399 573.933