Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1052 ATGGGTGAAAGAATACTGATACCACTGCTGATTTGCTTCAACTGTTTGTTGCTTGCAGTAGCACAAGATGCTAACAATGATTTTGTAGTCCTAAAGTCTCTAAGGGATTCTTGGCAATGGCAAAGCTCAACTCCCAACTGGGTGGGTTCAGATCCTTGCGATGGTTGGGATGGCATTAAGTGCAAAAACTCACATGTTATTTCCATATTATTACCAGATACTGGTTTGATCGGCCAGCTTTCAGGGGACATTGGATCACTTTCTGAATTGGAGAATCTGGATCTCTCATACAATAGGGGCCTAACAGGACCGCTTCCACCAGATATTGGAAACTTGAAGAAGCTGTCAAAATTAACTCTTGTTGGTTGTGGTTTTACCGGTCGTATTCCAGATGAAATAGGATCTCTACAACAGCTTCTTCTCCTATCTTTGAACTCCAACAATTTTGTTGGACCAATTCCACCTTCTATTGGCAATCTGTCAAATCTTACTTGGCTAGATTTAGCTGACAATCAGCTTGATGGATCCATCCCAGTATCTAGTGGCACTACCCCTGGTCTTGATATGTTACACAAGACACTGCACTTTCATCTTGGGAAGAATAGGCTTTCAGGAGAAATTCCTCCAAAACTTTTTAGCTCGAAAATGACTCTGATACATGCGATTTTTTACAACAATCAATTAGTTGGCAGCATTCCAGAAACGCTTGGGCTAGTTAAGAGTCTGATGGTGGTGCGctttgaaaataattcattGGATGGGTATGTGCCTCAGAGCCTCAACAGCCTTACCATTGTCACAGACCTgTTGTTGTCCAACAATAAGCTGCAAGGTGCCCTGCCAAACCTTACTGGGATGAACTCCCTAGAATACTTGGATTTGAGCAACAATAGCTTTGATGAGTCAAGTTTTCCACTGTGGCTGCCAAATCTGAAGAATTTAACAACATTACAAATGGAGAGTGTGAGCCTTAATGGAAACATTCCAGTTCCTTTATTTAGCCTTGCCAGTTTACAAAATGTTGTGCTAAGAAACAACAACCTTGGTGGAACCTTGGATATTGGCACCAACTACAGCAAACAACTGAAACTTATTGATTTGAAGTCAAATTCAATTCAGGACTTCGATCAACAAAATGATCTCCTAGAGGATATCACGATAATACTTGTGTCAAACCCGATTTGTACAGAAACAGGAGCGGTGGAGGATTACTGCACCATGCACGCTATCCCAGATACAAAACCACAAAATAACTGTCCACATCATATTTGCAGTCCAGATCAGATTCTCAGTCCCAAGTGTCAATGTGGATATCCATATACAGGAACTTTAACTTTCAGAGCACCTTCCTTTTTTGAATGGAGAAATAAAGCATCCCTGGAGGAAAATCTTTTGCATAAATTTCAATCTCAAGATCTATCTGTGGATTCAGTTTCTTTAATCATTTCATCTGCAGATCCATttagttgttttgtttttatcataCAAATTTTCCCACCAGGTCAAGATCatttcaaccaacaaaacaaatCGAGAATAAGCTCTTTTCTTGGCTACCTAAGTACTACTAATGCATATGATTTTATTACAGCAAACCAAGGTCAAGGACCTAAGGAGTCAAGTAATTCATCAAGCACTGTCATAATTATTGGAGCAGTAGTTGGTGGTTCTGTTCTGCTAGTGTTATTAGTCCTTGCAGGTGTTTATGCTTTCCGCCAGAAGAGAAGGGCAGAAAGAGCAATTTCTCGAAGCAATCCTTttgGAAACTGGGATCCAAATAAAAGCAACTGTGGCACCCCTCAGTTAAAAGCAGCAAGGCAGTTctcttttaaagaaattaagaaatacacAAACAACTTCTCACAAGCCAATGATATCGGATCAGGGGGTTATGGAAAGGTTTATCGGGGAACTCTTCCGAGTGGTCAAGTGGTAGCCATTAAACGAGCTCAAAAAGAATCGAAGCAGGGAGGGCCAGAATTCAAAGCTGAGATTGAACTCCTTTCGAGGGTTCACCACAAGAATCTTGTTAGCCTTGTGGGATTCTGCTTTGAACGAGAAGAACAAATGCTGGTTTATGAGTTTGTTTCAAATGGAACTCTGAAGGATGCTCTCACGGGGAAATCTGGAATTGTGTTGAGCTGGAGTAGAAGGCTGAAAGTAGCCCTTGGTGCTGCCAGGGGTTTGgcttatcttcatgaacatgctGATCCCCCTATTATACACAGGGacatcaaatcaaataacattTTGCTTGATGATAACTACAATGCAAAAGTTGCTGATTTTGGTCTCTCCAAGTCTATCTTAGATGATGAAAAAGATCATGTTACCACTCAAGTTAAAGGAACAATGGGCTACTTGGATCCAGATTATTATACTAGCCAGCAGTTGTCCGAAAAGAGTGATGTTTATAGTTTTGGAGTGCTAATGCTGGAGTTGATTACAGCAAGAAAGCCAATAGAACGAGGAAAATACATTGTGAAAGTGGTCAGGAATACAATAGATAAGACAAAAGACTTGTATGATCTTCACGAACTTATTGACCCCTCCATCTGTTCAGGATCAACATTGGAGGGTTTTGAGAAGTTTGTGGACCTTGCAATGGAGTGTGTTAAAGATTCAGGAGCTGACAGGCCCGCAATGAGTGATGTggttaaagaaattgaagaCATGTTGCGGTCTGTTGGTGTGAACCTAACATCTGAATCAGTAGCATCCACTTCAACTAGTTCTAGATATCAGGAGGTAAGTATAGTGAGTTCCCATCTGGACCATCCTTACAGCAATGAGTCCTTTGGTTCAAGTGCAGAacatttatatacaaaaaatgagCCTAGTTAA 2844 0.3906 MGERILIPLLICFNCLLLAVAQDANNDFVVLKSLRDSWQWQSSTPNWVGSDPCDGWDGIKCKNSHVISILLPDTGLIGQLSGDIGSLSELENLDLSYNRGLTGPLPPDIGNLKKLSKLTLVGCGFTGRIPDEIGSLQQLLLLSLNSNNFVGPIPPSIGNLSNLTWLDLADNQLDGSIPVSSGTTPGLDMLHKTLHFHLGKNRLSGEIPPKLFSSKMTLIHAIFYNNQLVGSIPETLGLVKSLMVVRFENNSLDGYVPQSLNSLTIVTDLLLSNNKLQGALPNLTGMNSLEYLDLSNNSFDESSFPLWLPNLKNLTTLQMESVSLNGNIPVPLFSLASLQNVVLRNNNLGGTLDIGTNYSKQLKLIDLKSNSIQDFDQQNDLLEDITIILVSNPICTETGAVEDYCTMHAIPDTKPQNNCPHHICSPDQILSPKCQCGYPYTGTLTFRAPSFFEWRNKASLEENLLHKFQSQDLSVDSVSLIISSADPFSCFVFIIQIFPPGQDHFNQQNKSRISSFLGYLSTTNAYDFITANQGQGPKESSNSSSTVIIIGAVVGGSVLLVLLVLAGVYAFRQKRRAERAISRSNPFGNWDPNKSNCGTPQLKAARQFSFKEIKKYTNNFSQANDIGSGGYGKVYRGTLPSGQVVAIKRAQKESKQGGPEFKAEIELLSRVHHKNLVSLVGFCFEREEQMLVYEFVSNGTLKDALTGKSGIVLSWSRRLKVALGAARGLAYLHEHADPPIIHRDIKSNNILLDDNYNAKVADFGLSKSILDDEKDHVTTQVKGTMGYLDPDYYTSQQLSEKSDVYSFGVLMLELITARKPIERGKYIVKVVRNTIDKTKDLYDLHELIDPSICSGSTLEGFEKFVDLAMECVKDSGADRPAMSDVVKEIEDMLRSVGVNLTSESVASTSTSSRYQEVSIVSSHLDHPYSNESFGSSAEHLYTKNEPS 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1052 947 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 6 931 - -
Ssu1g1052 947 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 6 931 - -
Ssu1g1052 947 Gene3D Ribonuclease Inhibitor 17 184 IPR032675 -
Ssu1g1052 947 Gene3D Ribonuclease Inhibitor 185 392 IPR032675 -
Ssu1g1052 947 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Ssu1g1052 947 Gene3D Transferase(Phosphotransferase) domain 1 696 912 - -
Ssu1g1052 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Ssu1g1052 947 Pfam Protein tyrosine and serine/threonine kinase 623 888 IPR001245 GO:0004672|GO:0006468
Ssu1g1052 947 MobiDBLite consensus disorder prediction 927 947 - -
Ssu1g1052 947 CDD STKc_IRAK 626 892 - -
Ssu1g1052 947 SUPERFAMILY Protein kinase-like (PK-like) 606 911 IPR011009 -
Ssu1g1052 947 ProSiteProfiles Protein kinase domain profile. 620 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1052 947 SUPERFAMILY L domain-like 45 396 - -
Ssu1g1052 947 SMART serkin_6 620 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1052 947 Gene3D Phosphorylase Kinase; domain 1 591 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1052 Ssu-Chr1 22697958 22704242 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1052 9 946 Receptor kinase-like Gene Family AT5G49760 52.183 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Ssu1g1052 PK_Tyr_Ser-Thr 8.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1052 - - gmx:100810323 1505.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0041 6 888517 890213 Ssu1g1052 1 22697958 22704242 PCT