Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1041 ATGGGCTCCGAGACTGAAATTTCTCCGGCGGACGCTCGCAAGGCTCCCGGCAAAGAGCAGCAAGCCGCCGGCGTCGGAATCCTTCTTCAGATCATGATGCTCGTCTTGTCCTTCGTCCTCGGCCACGTTCTCCGTCGCAAGAAGGTTTACATCATCCCCGAAGCCAGCGCCTCTCTTCTCATAGGGTTAATTGTTGGCATACTGGCTAACATTTCAGACACCGAAACTAGTATCAGGGCGTGGTTCAATTTTCACGAGgaatttttcttcctcttcctgtTGCCTCCCATCATATTTCAGTCTGGGTTCAGTCTCGCACCTAAAccctttttctcaaattttggaGCAATTGTCACATTTGCTTTATTCGGTACCTTCCTAGCTTCAATTGTAACGGGTATCTTggtTTATCTTGGTGGCTTGCTCTTTCTAATGTATAGGCTACCCTTAGTTGAGTGCCTGATGTTTGGTGCTCTTATATCAGCTACTGATACTGTTACTGTTGTGTCCATATTTCAGGAGCTGGGCATAGATGTCAATCTATACGCTTTGGTTTTTGGAGAATCTGTTTTGAATGATGCAATGGCAATTTCTTTGTACAGGACAATGTCATCAGTTAAAGCTGATCCATCTGGACAAAACTTATTAATGGTGGTTGTTCGATTTTTGGAGACTTTTGTTGGGTCAATGTCTGCTGGTGTTGGAGTTGGATTTATATCTGCTTTGCTATTTAAGTATGCAGGATTGGATATTGACAACCTTCAGAACTTGGAGAGTTGTCTTTTTGTCCTTTTCCCATATTTCTCgtACATGCTTGCTGAAGGCCTTGGTCTGTCTGGTATTGTATCTATACTGTTCACAGGAATAgTCATGAAGCATTATACGTATTCCAATTTGTCACAAAGTTCTCAAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCTTTAGCTGAAACATTTGTATTTATATACATGGGCTTTGATATTGCTATGGAGCAACATAGCTGGTCACATGTTGGATTTATATTCTTCTCCATTATATTCATTGGAATTGCAAGGGCAGCAAATGTCTTCTCTTGTGCTTATTTGGTCAATCTGGTCAGACCCGCTCATCAAAAGATACCACTAAAACATCAGAAGGCAATTTGGTATAGTGGACTACGAGGAGCAATGGCTTTTGCGCTTGCTCTGCAATCAATTCATGATCTTCCAGAAGGACATGGACAGACTATCTTTACTGCAACTACGGCAATAGTTGTTTTGACGGTATTGCTGATTGGTGGTTCGACTGGTACTATGCTGGAAGCTCTAGATGTTGCAGGTGAAGACAGTCATAATGATAGCCCTTTGGCTTCAGTTGGTACCATCACGAATTTTGAAGGAAACAACCGTTATATTGCTCCTCCTTACAATGAAGAATCATCTTCAGGGAACAAAATCAAGATGAAGCTAAAAGAATTCCACAAGAGTGCTGCATCTTTTACggcattagataaaaattaccTCACCCCATTCTTTACAAGTCAAAATggagatgaagatgatgaagCTGAGCCTTTTACTTCTACAAGATCGGGATTTCATGGTCAGAACCACTATTCATCATGA 1611 0.3948 MGSETEISPADARKAPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRKKVYIIPEASASLLIGLIVGILANISDTETSIRAWFNFHEEFFFLFLLPPIIFQSGFSLAPKPFFSNFGAIVTFALFGTFLASIVTGILVYLGGLLFLMYRLPLVECLMFGALISATDTVTVVSIFQELGIDVNLYALVFGESVLNDAMAISLYRTMSSVKADPSGQNLLMVVVRFLETFVGSMSAGVGVGFISALLFKYAGLDIDNLQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGIVMKHYTYSNLSQSSQRFVSAFFELISSLAETFVFIYMGFDIAMEQHSWSHVGFIFFSIIFIGIARAANVFSCAYLVNLVRPAHQKIPLKHQKAIWYSGLRGAMAFALALQSIHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALDVAGEDSHNDSPLASVGTITNFEGNNRYIAPPYNEESSSGNKIKMKLKEFHKSAASFTALDKNYLTPFFTSQNGDEDDEAEPFTSTRSGFHGQNHYSS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1041 536 MobiDBLite consensus disorder prediction 508 536 - -
Ssu1g1041 536 Pfam Sodium/hydrogen exchanger family 33 436 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu1g1041 536 PANTHER SODIUM/HYDROGEN EXCHANGER 6 13 519 - -
Ssu1g1041 536 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 31 446 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu1g1041 536 PANTHER SODIUM/HYDROGEN EXCHANGER 13 519 IPR018422 GO:0006812|GO:0015299|GO:0016021
Ssu1g1041 536 Gene3D - 150 202 - -
Ssu1g1041 536 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu1g1041 536 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu1g1041 536 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu1g1041 536 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1041 Ssu-Chr1 22573503 22581840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1041 19 438 Antiporters AT3G05030 34.312 4.17e-53 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1041 K14724 - gmx:100790830 943.34