Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1030 ATGTACCCGAGGCTGATACACCCCCACGATGCGATTGTGGCGCAGGAAGACATGCAAGGCGCCGCTTCCAACCTCTCTCACGCTCACAAGGGAGACCCTTGCCTCGTTCTCACGGCTGATCCCAAGCCTCGCCTCCGCTGGACTCAGGACCTCCATGAGAGGTTCGTTGATGCGGTCACGCAGCTTGGGGGAGCAAGTAAAGCTACACCAAAAGCAATCATGCGGACCATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAGAAATACAGGCTTGGTAAGCAATCTGGGAAAGATGTGGGTGAAGGATGCAAAGATGGTTCATATCTTTTAGAAAGCCCTGGCACTGATAACTCTTCTCCAAAGTTGCCAACTTCTGATACAAACGAGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTgcaaagtaaattacatttgcAAGTGGAGGCGGAGAAACACTTGCTGATTCGCCAGGATGCAGAGAGGAAATACATGGCCATGCTCGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTGGTGCTACAGTCATAGATACAGACAGCCAAAAGTTTCAAGGAATTGGAAGCAAAGCACCTAGAGGTTCCTTGGTTGATCCTCTTGGTTTTTACTCCTTGCCATCCGCTGAGGTGGCTGGAGTGAATGTCCCTAAAGAAGAAATACCGCCGAGTCTTCCTCTCCAAAGGGCTGATTGTTCAACTGAAAGTTGTTTAACCTCACATGAGAGTTCTGGAGGATTGACTTTAGAAGGGTCTCCAGGTGGGGGGAGAAGGAGGATGCTAGGCATGGACTCTATGGCAGCACCTTTGATCTGGAGTGAAGCTAAGATGAGAACTCAAGCCATCAATGTAGCCCAAGGTAATCATCCTCAAGGAATAACTAGGTATGGCATGTAG 942 0.4756 MYPRLIHPHDAIVAQEDMQGAASNLSHAHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDVGEGCKDGSYLLESPGTDNSSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLLIRQDAERKYMAMLERACKMLADQFIGATVIDTDSQKFQGIGSKAPRGSLVDPLGFYSLPSAEVAGVNVPKEEIPPSLPLQRADCSTESCLTSHESSGGLTLEGSPGGGRRRMLGMDSMAAPLIWSEAKMRTQAINVAQGNHPQGITRYGM 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1030 313 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Ssu1g1030 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Ssu1g1030 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Ssu1g1030 313 MobiDBLite consensus disorder prediction 116 131 - -
Ssu1g1030 313 MobiDBLite consensus disorder prediction 100 132 - -
Ssu1g1030 313 MobiDBLite consensus disorder prediction 251 275 - -
Ssu1g1030 313 Gene3D - 41 99 - -
Ssu1g1030 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 313 IPR044848 GO:0003700
Ssu1g1030 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Ssu1g1030 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Ssu1g1030 313 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1030 Ssu-Chr1 22414132 22418849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1030 31 255 G2-like Transcription Factor Family AT3G24120 48.954 2.61e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu1g1030 Myb_DNA-binding 5.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1030 - - gmx:100786397 587.8