Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1011 ATGGACTCGAAAACTAGTTCTAGAGCTCTCCCAAAACACCATCAGAAGACGGCCGGGATTCAAACCCTTGAGGCGAAAGACTCCAAGCAGAATACTGGGGAAATTGCTGAAAGCAAGAAGTTAGGAGCTTCAATCCAAAAGGGGTCTGCTGATTCCTTGAGCAATAAAAGTGGTTCTGGTGCTTCCTCATCCGTTCTCGACAAAGTGGATCGTGCTGCTAATGAGAACATAGGCTCACAGGAAAGCTCTATTGATCAAGACAAAAAGACGTCGGAATATGGAAGTGTGAAGAACAGTTCTGTTTCTGCCAAAGTTAGTGATGGGGCCAGCAGTCTTGGGAAGACAAGTGGAAGTGCCAAGATCAGCGATCGAGCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTGCAGAGGAAGCACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTACCAGCATAAACAAACCTCACAAGGCAAATGACTTGAGATGGGAAGCTATCCAAGCCGTTCGAAGTAGAGATGGGGTGTTGGGTTTAGGTCACTTTAGACTACTGAAGAGGCTGGGTTGTGGAGATATTGGAAGTGTATACCTCTCTGAGTTGAGTGGAACTAAATGTTACTTTGCAATGAAGGTAATGGACAAAGGGTCCCTAGCAAGTCGGAAAAAGCTACTTCGTGCTCAGACAGAACGAGAAATTCTGCAGTCTCTTGACCATCCTTTTCTCCCAACTTTGTACACCCATTTTGAGACAGAGAAATTCTCATGCTTGGTAATGGAATTCTGCCCAGGTGGAGACCTCCATACTCTTAGGCAGAAGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTTTATGTGGCAGAGGTTCTGCTGGCTTTGGAGTACCTCCACATGCTTGGGATTGTCTACCGTGACCTTAAGCCAGAAAATGTCCTTGTTAGGGACGATGGACATATTATGCTTTCAGACTTTGACCTCTCTCTCCGTTGTGCTGTTAGTCCAACCCTCGTTAAAACCTCGTCCACGGATTCTGAGCCTTTAAGAAAGAATCCTGTTTATTGTGTCCAACCTGCATGTATTGAACCACCTTCCTGCATCCAGCCATCCTGTGTTGCTCCTACTACATGCTTTTCACCCCGGCTCTTCTCTAGCAAATCAAAGAAGGACCGGAAGCCCAAAACTGAAATCGGCAACCAAGTGAGTCCATTACCTGAGCTCATTGCAGAGCCTACTGATGCTCGGTCCATGTCATTTGTTGGAACTCACGAATACTTGGCACCTGAGATCATTAAGGGTGAAGGTCATGGGAGCGCAGTTGATTGGTGGACTTTTGGGATCTTTCTATATGAGCTGTTGTTCGGTAAAACTCCTTTCAAGGGATCCGGGAACAGAGCCACATTGTTCAACGTCGTAGGTCAGCCACTGCGATTTCCCGAAGCACCTGTTGTCAGTTTTGCAGCAAGGGATCTTATAAGGGGGTTGCTTGTAAAGGAACCTCAGCACAGATTGGCCTATAAAAGAGGGGCTACTGAGATTAAGCAACATCCCTTTTTTGAAGGTGTGAATTGGGCATTGATCAGATGTGCTACCCCACCTGAGATCCCAAAGCCTGTAGAGTTCGAGAAGATACCCTCCCCAGCCTCATCAGGTGGTGAAAAGGCTGTTAACCATATGTCAATAGCTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG 1746 0.4588 MDSKTSSRALPKHHQKTAGIQTLEAKDSKQNTGEIAESKKLGASIQKGSADSLSNKSGSGASSSVLDKVDRAANENIGSQESSIDQDKKTSEYGSVKNSSVSAKVSDGASSLGKTSGSAKISDRADFVESGKSSICRGSTSSDVSDESTCSSFSTSINKPHKANDLRWEAIQAVRSRDGVLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSTDSEPLRKNPVYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEFEKIPSPASSGGEKAVNHMSIANQKGSDNYLEFDFF 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1011 581 Gene3D Phosphorylase Kinase; domain 1 184 269 - -
Ssu1g1011 581 MobiDBLite consensus disorder prediction 45 64 - -
Ssu1g1011 581 Pfam Protein kinase domain 421 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1011 581 Pfam Protein kinase domain 187 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1011 581 CDD STKc_phototropin_like 185 548 - -
Ssu1g1011 581 ProSiteProfiles Protein kinase domain profile. 186 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1011 581 SMART serkin_6 186 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1011 581 Gene3D Transferase(Phosphotransferase) domain 1 418 542 - -
Ssu1g1011 581 MobiDBLite consensus disorder prediction 93 118 - -
Ssu1g1011 581 MobiDBLite consensus disorder prediction 1 118 - -
Ssu1g1011 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Ssu1g1011 581 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 15 581 - -
Ssu1g1011 581 Gene3D Transferase(Phosphotransferase) domain 1 270 345 - -
Ssu1g1011 581 PANTHER FLIPPASE KINASE 1-RELATED 15 581 - -
Ssu1g1011 581 SUPERFAMILY Protein kinase-like (PK-like) 166 547 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1011 Ssu-Chr1 22101191 22104265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1011 35 581 AGC Kinase Gene Family AT5G47750 80.692 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu1g1011 Pkinase 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1011 K08286 - gmx:100781600 1070.07