Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1010 ATGTCAACGATGTTAGGGGAAACGGAGCATGAGTGTTTGCACTACGATTTCGATAAAGAAGCCTCTAGTTGCTCTTGCGGTTTCATTGGATTCAGGAGAAACCAAGTGTATGATTGCAACACCCACGAGACAAATAGTAATGAAGATTCAGAGGAGCTATTTGAGATCAATCTGAAGGAGCCATTGGATACAATATCTGAAGACTGCGAGAGCAGTGTGTTCTCTTTTGACATTCACAACGACAAAGATGTTGTTCATGTGGCAGTGGACCATGTTGGGGAATCAAGCATAGAAGTGCTTTTATGGACTTTGAAACATGCTGTCACACCCTCTACCACTGTTTATCTCGTGCATGTTTTTCCTGAAATCAGGCTCGTCCCAAGTCCATTTGGAAAATTTCCAAGGAGTCGTGTAAATTCAGAGTATGTTAACTTTCACTTGACTCAAGAGAAAGGCAAGAGGAAAGTGCTTCTTCAAAAGTTCATTGACCTGTGCCTTGATTCAAAGGTTAAGGTGGAGATGATGCTTATTGAGGGTGACAAAGTTGCCAAAGCTATAACGGACCTTGCTAGAGATCATAGTATAAGGAAATTGGTGATCGGAATTACCATATCTAATTTAAGGAGAAATGCCATAGCAGATAGGGTCCTTAGAAATGCACTAGAAATCTgtgatgttaaaatattatgcgATGGAAAGGAAGTGATTGATCAGATGCTTGGTTGCACTTCATCATGCTCCAGTGACAGTAGCAGTTACAGAGTTTCACAACAAGAAGATGAATCCCGTGGTTTTGTTCCTCTTATGTGTTTTGTGCCCAATCCTATATGGTTTTTTAGACCCAGATTTTAA 852 0.3979 MSTMLGETEHECLHYDFDKEASSCSCGFIGFRRNQVYDCNTHETNSNEDSEELFEINLKEPLDTISEDCESSVFSFDIHNDKDVVHVAVDHVGESSIEVLLWTLKHAVTPSTTVYLVHVFPEIRLVPSPFGKFPRSRVNSEYVNFHLTQEKGKRKVLLQKFIDLCLDSKVKVEMMLIEGDKVAKAITDLARDHSIRKLVIGITISNLRRNAIADRVLRNALEICDVKILCDGKEVIDQMLGCTSSCSSDSSSYRVSQQEDESRGFVPLMCFVPNPIWFFRPRF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1010 283 Gene3D HUPs 78 229 IPR014729 -
Ssu1g1010 283 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 93 220 - -
Ssu1g1010 283 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 14 280 - -
Ssu1g1010 283 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 14 280 - -
Ssu1g1010 283 Pfam Universal stress protein family 85 220 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1010 Ssu-Chr1 22091083 22092769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1010 85 232 U-box Gene Family AT2G45910 30.380 6.66e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1010 - - gmx:100818837 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0073 6 1333716 1335127 Ssu1g1010 1 22091083 22092769 PCT