Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1009 ATGTCTGCAACCTTAACGGAGACCTTGCACCATTCAGATGAAGGTGTGTCCGTGGAGGATAACTATGGCTATGGCGGCATCAGTAGCGTGAGTGAGATAGAGGAAGAGAATTCCTCACACTTGCACTTAACTAGTGATGGTCCTACTCCTATGGTGACCATTAGTGAAGAAGAGAACGAGAATGAAGACACTGTTTATGTGGCAGTGAGTAAGAGCCAGAGTAGCATGGAAGCCTTGTCATGGACCCTCAACAACTTGGCCACTCCGTCTACCATGCTCTATCTCATACACGTTTTCCCAGAGACCAAGCTCCTTCCAAATCCATTGGGAGTAGGAATGATTCCAAGGGAACAAGTGAGTCCTGAGCAGGTAGAGAGCTATATGGATCAAGAAAGAGGCAAGAGAAGAGAGCTTCTATACACATTCCTCCAATCATGCTCTGCTTCCAAGGTTAAGGTGGACACCATCCTGATTGAGAGTGACTTGATTGCAAAGGCTATCATTGATCTGATTCCAATTCTTCAAATAAGAAAACTAGTAATTGGAGCCAGCAAATCCCAAATAAGAAAATTGAGATCAAGGAAAGGGAGTGGCATAGCTGATCAGATTCTTCAGAATGCTCCAGAAAGTTGCAAGGTGAGTATTGTGAGTGAAGGAAAGGAAGTAAATGAACAGATAACTCGTGCCATTGCAAATGATACTTCCATGTCCCAGAAAAACAAGGAACAGCAAAATGCTTCGGtttcatgtgtttgttttaacttttaa 768 0.4258 MSATLTETLHHSDEGVSVEDNYGYGGISSVSEIEEENSSHLHLTSDGPTPMVTISEEENENEDTVYVAVSKSQSSMEALSWTLNNLATPSTMLYLIHVFPETKLLPNPLGVGMIPREQVSPEQVESYMDQERGKRRELLYTFLQSCSASKVKVDTILIESDLIAKAIIDLIPILQIRKLVIGASKSQIRKLRSRKGSGIADQILQNAPESCKVSIVSEGKEVNEQITRAIANDTSMSQKNKEQQNASVSCVCFNF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1009 255 Gene3D HUPs 51 232 IPR014729 -
Ssu1g1009 255 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 19 254 - -
Ssu1g1009 255 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 63 213 - -
Ssu1g1009 255 Pfam Universal stress protein family 64 209 IPR006016 -
Ssu1g1009 255 CDD STK_N 64 219 - -
Ssu1g1009 255 MobiDBLite consensus disorder prediction 1 23 - -
Ssu1g1009 255 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 19 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1009 Ssu-Chr1 22076506 22078064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1009 74 235 Plant U-box Gene Family AT5G57035 28.395 5.52e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1009 - - gmx:100781056 388.652