Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1006 ATGGGTGAACAATTGGGGCTGCTAAAGGTCATAGTTGTGCGAGGGAAAAGGTTGGTGATCCGGGATTTCAAGAGTAGTGATCCTTATGTTGTGCTCAAACTAGGGAATCAGACTGCAAAGACCAAGGTAATTAATAGCTGCTTGAATCCTGTTTGGAATGAAGAGCTGAATTTCACTCTGACAGAACCCTTGGGAGTTCTGAATTTGGAAGTATTTGATAAAGATCTTTTGAAGGCCGATGACAAGATGGGAAATGCTTTCCTCAACCTTCAACCAATAGTCTCTGCGGCTAGATTAAGAGATATTTTACGAGTGTCCTCTGGCGAGACAACATTAAGGAAGGTCATACCTGATGGTGATAACTGTCTTGTCCGTGAAAGCAGTATCAACTGTGTTAATGGTGAGGTGGTGCAGAATGTTTGGCTAAGGCTTCGTGGAGTAGAGTCTGGGGAACTAGAATTGACGATCAAGTTGGTCACACCTGTTGCTCCTGCAATATAG 501 0.4351 MGEQLGLLKVIVVRGKRLVIRDFKSSDPYVVLKLGNQTAKTKVINSCLNPVWNEELNFTLTEPLGVLNLEVFDKDLLKADDKMGNAFLNLQPIVSAARLRDILRVSSGETTLRKVIPDGDNCLVRESSINCVNGEVVQNVWLRLRGVESGELELTIKLVTPVAPAI 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1006 166 SMART C2_3c 7 102 IPR000008 -
Ssu1g1006 166 PRINTS C2 domain signature 46 59 IPR000008 -
Ssu1g1006 166 PRINTS C2 domain signature 22 34 IPR000008 -
Ssu1g1006 166 PRINTS C2 domain signature 67 75 IPR000008 -
Ssu1g1006 166 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 161 IPR044562 -
Ssu1g1006 166 Pfam C2 domain 7 99 IPR000008 -
Ssu1g1006 166 Gene3D C2 domain 3 162 IPR035892 -
Ssu1g1006 166 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 11 1 161 - -
Ssu1g1006 166 CDD C2_ArfGAP 5 150 - -
Ssu1g1006 166 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Ssu1g1006 166 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 158 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1006 Ssu-Chr1 22008863 22009576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1006 1 157 C2H2 Transcription Factor Family AT4G21160 44.586 8.41e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1006 - - gmx:100779624 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0078 6 1367226 1368334 Ssu1g1006 1 22008863 22009576 PCT