Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1001 atggACCTCTTCGCCGCCGACCACTTCCCCGTCCCCGACCGCGTCGCTCCATTTCCCGATTCCGGCGACCTCCTCTTCGCTGCCGACCTCCTCTCTCCCCATCACAACCCCCAGAAGCTCCGCCCCATCAGGTCCGTCCCCTCCGCCCTCAATGCCCCCTCCACCCACACTCCTCCGCCCCACGCGCAGGATCCGATTGCTCCCGGGTCGGGTCACGCACCGGGCCACGAATCCGGCTCGTCTTTAGATGCTGAGGATGAAGATGAGGATGATGACAATTCGTCAGCAAGTACTGAAGGACTTGGCTCTAGAAAGAGGAGGAGAAAGACTGCGAGAAAGTTTGAAGATTTTGTGAAGGATTTGGTAACGAAGGTGATGGAAAAGCAAGAGCAGATGCACAAACAGTTAGTGGAAATGATAGAAAAGAAGGAAAGGGAAAGGATAAAGAGAGAAGAAGCTTGGAAGAATGAGGAGATGGAGAGAATTAGAAAAGATGAAGAGGCCAGAGCCCAAGAAAAGTCTCGCAATTTGGCCCTCATATCCTTCGTTCAGAACCTGTTGGGCCATCAAATTCAAATCCCCCAACCAGTAGAAGCATGCGGCAAAAGAGAAGAGGATGAAGTTGAGGTGATCGCTCAAAAGGATTTGAACGGTAGTGACCCAAGTAACAACAGATGGCCTGATGTTGAAGTACAAGCACTGATCACTGTGAGAACTTCATTGGAGCACAAGTTTCGTCTAATGGGATCAAAAGGGTCAATATGGGAGGAGATATCTGAAGCAATGCATGGCATGGGCTACAACCGCTCTGCAAAGAAGTGTAAGGAGAAGTGGGAAAACATCAACAAGTACTATAAAAGGACAATAGGGAGTGGCAAGAAACGGCGTCTAAATAGTAAAACTTGCCCATACTTTGATGAGTTGGACATTCTGTATAGAAACGGGCTCCTAAGTACTATTGGAAATACGTCGAGCAATACCAGCGATGTTCCCCAAATTGAAGAAAAGGAGTAG 1014 0.4892 MDLFAADHFPVPDRVAPFPDSGDLLFAADLLSPHHNPQKLRPIRSVPSALNAPSTHTPPPHAQDPIAPGSGHAPGHESGSSLDAEDEDEDDDNSSASTEGLGSRKRRRKTARKFEDFVKDLVTKVMEKQEQMHKQLVEMIEKKERERIKREEAWKNEEMERIRKDEEARAQEKSRNLALISFVQNLLGHQIQIPQPVEACGKREEDEVEVIAQKDLNGSDPSNNRWPDVEVQALITVRTSLEHKFRLMGSKGSIWEEISEAMHGMGYNRSAKKCKEKWENINKYYKRTIGSGKKRRLNSKTCPYFDELDILYRNGLLSTIGNTSSNTSDVPQIEEKE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1001 337 ProSiteProfiles Myb-like domain profile. 218 282 IPR001005 -
Ssu1g1001 337 Coils Coil 156 176 - -
Ssu1g1001 337 Pfam Myb/SANT-like DNA-binding domain 224 309 IPR044822 -
Ssu1g1001 337 Coils Coil 126 146 - -
Ssu1g1001 337 CDD GT1 224 288 - -
Ssu1g1001 337 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 76 334 - -
Ssu1g1001 337 Gene3D - 226 287 - -
Ssu1g1001 337 PANTHER - 76 334 - -
Ssu1g1001 337 MobiDBLite consensus disorder prediction 48 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1001 Ssu-Chr1 21636130 21638032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1001 105 314 Trihelix Transcription Factor Family AT5G47660 46.491 8.24e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu1g1001 Myb_DNA-bind_4 2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1001 - - pvu:PHAVU_006G139200g 539.65