Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0999 ATGGCTGAGTCTGACAACGAGTCAGGAGGTCAAACCGGCAACGCGAGTGGGAGCGGTGAATTTTCAGGGTGCAGAGAGCAAGACAGGTTCCTCCCCATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTACCGGCGAACGCGAAGATCTCGAAGGAGGCGAAGGAAACGGTGCAGGAGTGTGTGTCGGAGTTCATCAGCTTCATCACAGGGGAGGCGTCTGATAAGTGccagaaggagaagaggaagacgATCAACGGTGATGATCTGCTGTGGGCCATGACCACGCTGGGGTTTGAGGAGTACGTGGAGCCGCTCAAGATTTACCTGCACAAGTATAGGGAGATGGAGGGGGAGAAAACTGCCATGATGGGTAGGCCACCCGGTGGTGATCAGAGGGATGAGGGTTATGGTCATGGTCATGGTCATGGTCATGGTCATGGTCATGGTCATGGCGGGGTCGTGCAAACAcctatgatgatgatgatggggCATCAGCAGCATCAAGGCCACGTGTATGGATCTGGGACTGGATCACCTTCTTCTGGAAGAACTAGATAG 561 0.5027 MAESDNESGGQTGNASGSGEFSGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYREMEGEKTAMMGRPPGGDQRDEGYGHGHGHGHGHGHGHGGVVQTPMMMMMGHQQHQGHVYGSGTGSPSSGRTR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0999 186 MobiDBLite consensus disorder prediction 1 24 - -
Ssu1g0999 186 MobiDBLite consensus disorder prediction 125 155 - -
Ssu1g0999 186 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Ssu1g0999 186 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Ssu1g0999 186 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Ssu1g0999 186 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ssu1g0999 186 SUPERFAMILY Histone-fold 27 135 IPR009072 GO:0046982
Ssu1g0999 186 Gene3D Histone, subunit A 20 136 IPR009072 GO:0046982
Ssu1g0999 186 MobiDBLite consensus disorder prediction 1 21 - -
Ssu1g0999 186 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 172 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu1g0999 186 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 172 - -
Ssu1g0999 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0999 Ssu-Chr1 21616866 21617426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0999 1 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.031 9.67e-72 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu1g0999 CBFD_NFYB_HMF 1.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0999 K08065 - gmx:100778034 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0082 6 1431462 1431869 Ssu1g0999 1 21616866 21617426 PCT