Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0982 ATGTCTGGTAGAGAGGTTGGTGGTGGCGGTGTTTTTGTGGAGTGGGAGGAGCATGTGATATGCCAGGAGCGTGGGAACCGAGTGATTCATTTCTACCTGAAGGATGCGTTGGGGAATTCGGTGCTGGCCGTTGTGGGGACTGAGAGGAGTGTGAGGCACATGATGTATGTTGTCCCTGACCATTTCTTGCAGGCTTATGGATCCACACAGCCCATCAATGCTTGCAAGTGGAGGGCGCGGAGAGAGGTCGTAGACTGGCTCACTTGTCTGGTCTCGCGGAATCGCCAGCACCATGCAGGTGTTCAGCTGGATGATTCAGCACAAGCCGATGAATCTCTCAAGATTTTAACACCTGGAGTCAAtgtcaataataaatttttacctgGTAAAATGATTTCTAGGAAACTAAAATTCCAAAGTTCAGATATTGAATGGTCAGGCATGACTTGGTTTTGTGCTAAACAGCTGAAGCACTACTCAGGGTTTTGCAGGAATGGAACAACCATAAATgttcattcatttgtatatattatggcTGAAGAAGAAAACCACTATCTTGGTTACTTGGAAGATATGTATGAAGACaagaagagacaaaaaaaagtgAAGGTACGGTGGTTTCACCATGGTCGGGAAGTTAAGCATGTGATTCCACAGCTGAATCTGCAAGAGGGAGAGGTTTTCATTACACCTCATGTTCAGGTGATCAGTGCTGAGTGTGTCAATGGTCCTGCAACAGTTTTGACTCCTAAGCATTATGAGAAATACATGGCTACTGTGCCCCATACCTCTTTATCTGAGATCCATACATGCTTTAGGCAGTTTAAAAACAATAAGCTTAAGCCCTTCACACTTACAAAGTTGCGTGGATATAGTAACCAATCAGTACTTTCTTGTTTGAGTAGTCCTATTCTCTCCAAGAGAAAGGCAAAGTGTGACAAATCACACACAGATGATGATGAGAACTTCACTCAAGATGATCCTTTAAGGTCCAGCAATAAGAGGAATAGAAGTTCTAAGGACCAATTATTTGAAAAGGGTTTTTCTGGTCTGCAAATCTCTGTTCCTACAAATGAAATGACAAAACGTGAACCAAAATAccctagtttaaaattaaaactatcaAGAAAAACAATGGGTATTAAGGTTATTGGACCAAAGCCTCAACCTCAACTGTCTTTTAAGGTTGGTGAAAAGATAGAGGTTCTCTGTCAAGATAGTGGCATTAGAGGATGCTGGTTTAGATGCAAAATTTTGAGTACATCTCCAAGGCTGCTGAAGGTCCAGTATGATGATTTGCTGGATGTAGATGGACCAGAGAAACTAGAGGAATGGGTCCCTGCATCTAGAGTGGCAGCTCCTGACAAATTGGGTATGCGATGTTCAGGACGCTTAACAGTACGACCACGCCCTCCTGAATCTACTACAGGTCATAGTTTGGAGATTGGAGCAGCAGTGGATGCCTGGTGGTGTGATGGATGGTGGGAAGGTGTCATAACTGCGGTTAATGTTAGTGGAGATGGAATCCTGCAGGTTTTTAGCCCTGGTGAAGAGAGGTTCCTAACAGTCGAGAAGAAGAACATTCGGATTTCCCGAGATTGGATTAATAACAGCTGGGTTGATATACAGGGAAAGCCCGACATTTGCAGCTATTTGTCTTCAAACGTCAGGTCCAGCATCAGGATGTCAGCTAATTCTGCAGTGGTAGATGGATCTATGTCTGATTGCTCTGCAATATTAGAAAGTAAATCATCATCAATTGCCAAAGTTGAAGTTGCTAAGAAGGTTGAGCCTGAATTATCTGGTTTGGAACCACCTGTTGACCTGGAAATTGTGAAGGGAATAACTTTGAGGAAGCCACTTGATGCCATTCATGAAGACAAGGATAACAACTCTGGTGATGGCTGTGATGATGAAGCTGACAAGGCTGTGAAGACACTTCTGGCCTTAAATGAAGTCAAGGATAACAACTctggtggtggcagtgatgaTGACActgacaatgatgatgatgttgatgaggatGTTGACGATGATGCTgacaatgatgacgaggacagTGAGGAAAATTTTGATTGTTCTGAACCAAAACTTGATGCAGCAGAAGCAAGATGA 2115 0.4043 MSGREVGGGGVFVEWEEHVICQERGNRVIHFYLKDALGNSVLAVVGTERSVRHMMYVVPDHFLQAYGSTQPINACKWRARREVVDWLTCLVSRNRQHHAGVQLDDSAQADESLKILTPGVNVNNKFLPGKMISRKLKFQSSDIEWSGMTWFCAKQLKHYSGFCRNGTTINVHSFVYIMAEEENHYLGYLEDMYEDKKRQKKVKVRWFHHGREVKHVIPQLNLQEGEVFITPHVQVISAECVNGPATVLTPKHYEKYMATVPHTSLSEIHTCFRQFKNNKLKPFTLTKLRGYSNQSVLSCLSSPILSKRKAKCDKSHTDDDENFTQDDPLRSSNKRNRSSKDQLFEKGFSGLQISVPTNEMTKREPKYPSLKLKLSRKTMGIKVIGPKPQPQLSFKVGEKIEVLCQDSGIRGCWFRCKILSTSPRLLKVQYDDLLDVDGPEKLEEWVPASRVAAPDKLGMRCSGRLTVRPRPPESTTGHSLEIGAAVDAWWCDGWWEGVITAVNVSGDGILQVFSPGEERFLTVEKKNIRISRDWINNSWVDIQGKPDICSYLSSNVRSSIRMSANSAVVDGSMSDCSAILESKSSSIAKVEVAKKVEPELSGLEPPVDLEIVKGITLRKPLDAIHEDKDNNSGDGCDDEADKAVKTLLALNEVKDNNSGGGSDDDTDNDDDVDEDVDDDADNDDEDSEENFDCSEPKLDAAEAR 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0982 704 MobiDBLite consensus disorder prediction 662 692 - -
Ssu1g0982 704 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 596 - -
Ssu1g0982 704 MobiDBLite consensus disorder prediction 651 704 - -
Ssu1g0982 704 Pfam BAH domain 168 261 IPR001025 GO:0003682
Ssu1g0982 704 SMART agenet_At_2 478 536 IPR014002 -
Ssu1g0982 704 SMART agenet_At_2 392 457 IPR014002 -
Ssu1g0982 704 PANTHER BROMO ADJACENT-LIKE DOMAIN PROTEIN 10 596 - -
Ssu1g0982 704 ProSiteProfiles BAH domain profile. 167 286 IPR001025 GO:0003682
Ssu1g0982 704 Coils Coil 697 704 - -
Ssu1g0982 704 MobiDBLite consensus disorder prediction 310 341 - -
Ssu1g0982 704 Pfam Agenet domain 397 472 IPR008395 -
Ssu1g0982 704 Gene3D - 134 289 IPR043151 -
Ssu1g0982 704 SMART BAH_4 167 286 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0982 Ssu-Chr1 21362717 21370064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0982 406 534 PHD Transcription Factor Family AT5G58610 29.323 3.51e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0982 - - gmx:100816046 1177.93