Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0981 ATGGGTCGTTCTCGTGGGAATTTTCACCACGCCGATGAGGACCCCAACCAGAGgtcaaggagaaaaaagaatgcTGCCAGTGGAGAAAATTCAGAATCTGGGGCTGCAGGCCAAGGAGCAGGTGATGGGAAAAAGGCTCTGTACCACtgcaattattgtaataaagaTATAACGGGGAAAATCCGTATCAAGTGTGCCATGTGCCCAGATTTTGATTTGTGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCATAAAAGCAATCACCCTTACAGGGTTATGGATAATTTGTCATTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTACTTCTGGAGggaATTGAAATGTATGGCTTGGGAAACTGGGCAGAAGTTGCTGagcatgttggaaccaaaaacaaagaatcatgcatagaaCACTATAGGAATGTATACTTGAACTCCCCGTTCTTCCCAGTTCCGGACATGTCTCTTGTTGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCGAAAGGGCAGGGTGAAGACAAGAAAGGAATTTCCATGGGGGATCTTAGTATAAAGGCAGAATCTACCTTTTCTCCATCTAGAGCCAAAGTTGAAGATTCCCATAAAGCTGGCTCCACTAACCGTCTGCCTTCCAGTTTGAATTCAGAGTCAGATTCTGGCCCCTCAGGTAACATACATGCTGCAGCTGGTGCTAACCAAAAGGCATCTAATGTGGCCCGGGGAAAAGGTGGTCCAGGAATTGTTAAAATGGAAGATTCTCAAATAGACAGAGATTTTGGAGGAAAGAAGCCAACTTCTTCAGGAAATGAAGGTCCTTCTTTAGTAGAATCGAGTGGTTATAACCCCAAAAGACAGGAATTTGATCCTGAATATGATAATGACGCTGAACAACTACTCGCTGAAATGGAATTTAAGGACACTGACACTGAGGATGAGCGAGAGCTGAAACTACGTGTGTTGCGTTTCTATTCAAAAAGGCTTGATGAAAGAAAGCGTAGGAAGGATTTCATACTTGAAAGAAATTTGCTATACCCAAATCCATTTGAGAAGGATTTAACACCTGAGGAGAGGACAATATGTCGGAAATATGACTTATTCATGCGCTTTCATACTAAGGAGGAGCATGAGGAGTTGCTTAGAACAGTTATCTCTGGACACAGAACTCGTAAAAGACTTCAAGAGCTTAAGGAAGCCCGGGCTGCTGGTTGCCGCAATTCAGCTGAAGCTGATAGATATCTGGCACACAAGAGAAGAAGGGAAGCTGAAGAAAGTGCTCGTAGGACAAAAGAAAGTGCTCAGGTTGGCCCAAGCAATCAAGGGGTTCCAAATGCATTGATGTCTCCAGACTCGGCTGGCAAGGATTTGAGTGCAAGACCTGCAGGGCCTGCTACTTCTAGTTCTGTCAATGAAATGGATTTGACAGGATACTATGGGGCAGATTTACTTTCTGAACCAGAGAAACGTTTATGCTGTGATCTAAGGTTGCCTCCAGCCGTGTATCTAAAGATGCAAGAGCAACTGTCTCTACAAATACTTGCTGGCACTGTATCTGCAAAATCAGATGCTCATCAATTGTTCAAGATGGATGCCATGAAAATTGACAGGGTGTATGATATGCTCATTAAAAAGGGAATTGGTTCACCCTGA 1677 0.4192 MGRSRGNFHHADEDPNQRSRRKKNAASGENSESGAAGQGAGDGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWAEVAEHVGTKNKESCIEHYRNVYLNSPFFPVPDMSLVVGKNRKELLAMAKGQGEDKKGISMGDLSIKAESTFSPSRAKVEDSHKAGSTNRLPSSLNSESDSGPSGNIHAAAGANQKASNVARGKGGPGIVKMEDSQIDRDFGGKKPTSSGNEGPSLVESSGYNPKRQEFDPEYDNDAEQLLAEMEFKDTDTEDERELKLRVLRFYSKRLDERKRRKDFILERNLLYPNPFEKDLTPEERTICRKYDLFMRFHTKEEHEELLRTVISGHRTRKRLQELKEARAAGCRNSAEADRYLAHKRRREAEESARRTKESAQVGPSNQGVPNALMSPDSAGKDLSARPAGPATSSSVNEMDLTGYYGADLLSEPEKRLCCDLRLPPAVYLKMQEQLSLQILAGTVSAKSDAHQLFKMDAMKIDRVYDMLIKKGIGSP 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0981 558 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Ssu1g0981 558 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Ssu1g0981 558 SUPERFAMILY RING/U-box 48 110 - -
Ssu1g0981 558 MobiDBLite consensus disorder prediction 1 42 - -
Ssu1g0981 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Ssu1g0981 558 SMART sant 104 153 IPR001005 -
Ssu1g0981 558 SMART zz_5 44 89 IPR000433 GO:0008270
Ssu1g0981 558 MobiDBLite consensus disorder prediction 214 232 - -
Ssu1g0981 558 MobiDBLite consensus disorder prediction 200 298 - -
Ssu1g0981 558 Gene3D - 473 556 IPR036388 -
Ssu1g0981 558 MobiDBLite consensus disorder prediction 427 479 - -
Ssu1g0981 558 ProSiteProfiles SWIRM domain profile. 472 558 IPR007526 GO:0005515
Ssu1g0981 558 MobiDBLite consensus disorder prediction 1 27 - -
Ssu1g0981 558 PIRSF Txn_adaptor_ADA2 35 558 IPR016827 GO:0003713|GO:0006357|GO:0035065
Ssu1g0981 558 Gene3D - 102 153 - -
Ssu1g0981 558 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 557 - -
Ssu1g0981 558 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Ssu1g0981 558 Gene3D - 41 96 IPR043145 -
Ssu1g0981 558 MobiDBLite consensus disorder prediction 440 455 - -
Ssu1g0981 558 Pfam Zinc finger, ZZ type 46 88 IPR000433 GO:0008270
Ssu1g0981 558 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Ssu1g0981 558 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Ssu1g0981 558 MobiDBLite consensus disorder prediction 276 290 - -
Ssu1g0981 558 SUPERFAMILY Homeodomain-like 467 555 IPR009057 -
Ssu1g0981 558 CDD ZZ_ADA2 48 96 IPR041983 -
Ssu1g0981 558 CDD SANT 108 150 IPR001005 -
Ssu1g0981 558 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 557 IPR034318 GO:0003713|GO:0006357|GO:0035065
Ssu1g0981 558 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0981 Ssu-Chr1 21336602 21343175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0981 1 556 EF-hand Containing Proteins AT3G07740 46.701 1.15e-159 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu1g0981 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0981 K11314 - gmx:100811887 1033.09