Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0975 atgcaAACTTCTCAGAAACACCCAACTTCCGCTGGTATCCGTTTATATCACCAGCCTGTGCAAGACATTGATCCCTGCACTCATTACCAAATATTACAAGGCAATTTATGCAATGAAATCCATGATAGCAGCAGCCAGGGAACCACTATTTCTTTTGAACCCTGCAAGGAGCAATACTTTACCCTTGAATCATCCCCAGCAATCAATGATCTCATAGGTTGTGATTCTGCTTCCTATGCTAGTGTATCATCCAATTCCAATAGGAGTCCTTTTTCTCCACAAGCTTCTCATTCATACCATTCTGACCAGCATCAGTCATCAGACAACACCTATGGATCACCAACAAGTGTACACTCTAGTGCTGATGATAGCTACGAATTGAAGAACAAGCTTAGAGAACTGGAGATTTCATTGTTGGGGGCTGATTCAGATATTGTTGACAGTTGTCGCTGCTGCTACAAGGGTGGCCACCACGGAGCATCTCAAATGGCTAAATACAATTGGGATCAGATTGTGGAAATGATTCCAAAATTAGACTTGAAAGAAGTCCTCATTCGATGTGCACAAGCTGTGGCTGATGGTGACATTGAAACAGCAGTGGGATTTATGAATAATGTGTTGGCAAAGATGGTATCAGTAGGGGGTGATCCAATCCAGAGGTTAGGTGCTTACATGTTGGAGGGTCTAAGAGCAAGGTTGGAGTCTTCGGGGAGCTTAATCTACAAAGCCTTGAAATGTGAGGAACCAACAAGCAAAGATCTCATGAGTTACATGCACATCCTATATCAGATTTGCCCATATTGGAAGTTTGCTTACATATCTGCAAATGTTGTCATTGGAGAAGCAATGCTAAATGAATCAAGAATTCACATAATTGACTTCCAAATTGCACAGGGCACTCAGTGGTTGTTGCTTATTCAGGCTCTTGCATGTCGTGCAGGTGGACCGCCTTTCATTCGTGTAACTGGTGTTGACGATTCCCAATCACGTCATGCAAGGGGTGGAGAACTTCACATTGTAGGAAAACGGCTCTCGGATTATGCCAAGTCTTGTGGGGTGCCATTTGAGTTCCACAGTGCTGCAATGTCTGGATGTGACATTGAACTAGAAAACCTTGTGGTTCAACCCGGGGAAGCTCTGGCTGTGAACTTCCCTTATGTTTTGCACCACATGCCAGATGAGAGTGTGAGCACAGAGAACCATAGGGACAGGCTATTGAGATTGGTGAAGAGCTTGTCACCCAAGGTTGTCACCCTTGTTGAGCAAGAATCCAACACCAACACTTCACCCTTTTTCCAAAGGTTTGTTGAGACCTTGAGTTATTACACTGCTATGTTTGAGTCCATAGATGTGGCCCCCCCCAGAGATCATAAGCAAAGGATCAGTGCAGAACAACACTGTGTGGCTCGTGACATTGTCAACATGATAGCTTGTGAGGGGGCTGAGAGGGTGGAAAGGCATGAACTCTTGGGGAAGTGGAGGTCAAGATTTTCAATGGCTGGTTTTGCACCATGCCCTTTGAGTCCCTCAGTCACGGCTGCAGTTACAGATATGTTAAATGAATTCAATGAAAATTATAGGCTTGAACATAGAGATGGTGCTCTCTATCTAGGATGGAAGAACAGAGCTATGTCCACCTCTTCTGCTTGGAGATGTTAG 1659 0.443 MQTSQKHPTSAGIRLYHQPVQDIDPCTHYQILQGNLCNEIHDSSSQGTTISFEPCKEQYFTLESSPAINDLIGCDSASYASVSSNSNRSPFSPQASHSYHSDQHQSSDNTYGSPTSVHSSADDSYELKNKLRELEISLLGADSDIVDSCRCCYKGGHHGASQMAKYNWDQIVEMIPKLDLKEVLIRCAQAVADGDIETAVGFMNNVLAKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEEPTSKDLMSYMHILYQICPYWKFAYISANVVIGEAMLNESRIHIIDFQIAQGTQWLLLIQALACRAGGPPFIRVTGVDDSQSRHARGGELHIVGKRLSDYAKSCGVPFEFHSAAMSGCDIELENLVVQPGEALAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETLSYYTAMFESIDVAPPRDHKQRISAEQHCVARDIVNMIACEGAERVERHELLGKWRSRFSMAGFAPCPLSPSVTAAVTDMLNEFNENYRLEHRDGALYLGWKNRAMSTSSAWRC 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0975 552 ProSiteProfiles GRAS family profile. 171 551 IPR005202 -
Ssu1g0975 552 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 20 550 - -
Ssu1g0975 552 MobiDBLite consensus disorder prediction 85 121 - -
Ssu1g0975 552 Pfam GRAS domain family 180 551 IPR005202 -
Ssu1g0975 552 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 550 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0975 Ssu-Chr1 21243282 21244940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0975 1 551 GRAS Transcription Factor Family AT4G17230 60.036 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu1g0975 GRAS 3.5e-126 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0975 - - gmx:100819190 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0114 6 1897615 1899267 Ssu1g0975 1 21243282 21244940 PCT