Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0972 ATGGTTGGAAATAGGATTGATTGGAGTGTGGGGAAGTGCATAATGGAAATGGACCCTGGCAAGCTTTTCATTGGTGGGATTTCCTGGGACACAAATGAAGACAGACTCAGACAGTATTTCCAGAATTTTGGAGAAGTAGTGGAGGCTGTGATCATGAAGGATCGCATCACAGGGCGTGCCCGTGGATTCGGATTTATTGTTTTTGCCGATCCTTTTGTCGCGGAGCGAGTTGTTATGGAGAAGCATGTCATAGATGGTAGAACGGTTGAAGCAAAAAAGGCTGTCCCTAGAGATGATCGGAATGTTCTGAACAGAAGCAACAACAGCAGTCATGGGTCACCTGGTCCTACTCCTACCCGCACAAAGAAGATATTTGTTGGAGGTCTAGCATCCACAGTTGCTGAGAGTGACTTTAAGAAGTACTTTGATCAATTTGGAACAATTACAGATGTTGTTGTGATGTATGATCATAACACTCAAAAGCCTAGAGGTTTTGGATTCATCACATATGATTCTGTGGAAGGAGTTGAGAAAGTGCTGCATAAAACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTTAAGAGGGCCATTCCGAAGGAATTATCTCTAGGTCCAAGTAGAGGCCAGATAGGTGGATATATTTATGGTATAAGTAGGGTTAGTAACTTTCCTAATGGTTGTATTCAGAGATATAACCAAAATCTTGTTGGTGGTAATGGACTAAGAATAGATGGTAAGTTGAGTCCTGTTACTGTTGGCAGTAGTGGATATCCTCTTTTGAGTCATACTTACGGGACAGGACTCAACTTTGAGCCACCATTGAGCCAAAATGAAAGTGCAAACTTTACATCTAACTTTGCCATAGGACGGGCATTGAACTCTTACAGTGGAAATCCAAGCAGGTACAATAATGCCATAGGTTATGCCGGTTCAAGTGTTGGCAACAACTCAACCATAACTtctacaaatcaaaatttgaggggGAATAGGAACCTTAACTATGCTACTAACCTTACAAGCTCTGATGCTTTTGTTGGTTATGGAAGTGAAAATTCAAGCATGGGTTCTTTTGGTAGTATTGGATCACTTTGGAGTTCCTCGTTTGGTACTGATCAAGCTGGAACTATTAGCTCTGGATTTGGTAAGGGCAGTCTTAGTTATAGGTCTGGACATATGATTTTAGGGTCAAAAACAGTAGGTTATGAAAAAAGCAGTGAAAGTATTGGTGCATCAGCTTCATCATTTGCTTTATCAAATGGCAGTTATGATGAAGCATACAAAGATACTTATGAAACTGGATCATTTTATCAGGACCACACTTGGAGATCATCAGCTTCAAAACTAGAGGATTCTGGCTCTCTCAGTTTTGGCCTTGAAAATGTTGTTTCAGATTTAATGAGCAAAAGCTCTGGTGATCACATTCAGGCTTACGCTATTGCTAATAGACAATCAAATAGAGGAATTGCTGCCTAG 1476 0.4011 MVGNRIDWSVGKCIMEMDPGKLFIGGISWDTNEDRLRQYFQNFGEVVEAVIMKDRITGRARGFGFIVFADPFVAERVVMEKHVIDGRTVEAKKAVPRDDRNVLNRSNNSSHGSPGPTPTRTKKIFVGGLASTVAESDFKKYFDQFGTITDVVVMYDHNTQKPRGFGFITYDSVEGVEKVLHKTFHELNGKMVEVKRAIPKELSLGPSRGQIGGYIYGISRVSNFPNGCIQRYNQNLVGGNGLRIDGKLSPVTVGSSGYPLLSHTYGTGLNFEPPLSQNESANFTSNFAIGRALNSYSGNPSRYNNAIGYAGSSVGNNSTITSTNQNLRGNRNLNYATNLTSSDAFVGYGSENSSMGSFGSIGSLWSSSFGTDQAGTISSGFGKGSLSYRSGHMILGSKTVGYEKSSESIGASASSFALSNGSYDEAYKDTYETGSFYQDHTWRSSASKLEDSGSLSFGLENVVSDLMSKSSGDHIQAYAIANRQSNRGIAA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0972 491 SUPERFAMILY RNA-binding domain, RBD 114 217 IPR035979 GO:0003676
Ssu1g0972 491 SMART rrm1_1 123 195 IPR000504 GO:0003723
Ssu1g0972 491 SMART rrm1_1 21 92 IPR000504 GO:0003723
Ssu1g0972 491 MobiDBLite consensus disorder prediction 97 121 - -
Ssu1g0972 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 199 IPR000504 GO:0003723
Ssu1g0972 491 CDD RRM2_DAZAP1 120 199 IPR034131 GO:0003723
Ssu1g0972 491 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 15 491 - -
Ssu1g0972 491 CDD RRM1_hnRNPA_hnRNPD_like 22 92 - -
Ssu1g0972 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 87 IPR000504 GO:0003723
Ssu1g0972 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 182 IPR000504 GO:0003723
Ssu1g0972 491 Gene3D - 19 102 IPR012677 -
Ssu1g0972 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 96 IPR000504 GO:0003723
Ssu1g0972 491 SUPERFAMILY RNA-binding domain, RBD 18 115 IPR035979 GO:0003676
Ssu1g0972 491 Gene3D - 119 205 IPR012677 -
Ssu1g0972 491 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 15 491 - -
Ssu1g0972 491 MobiDBLite consensus disorder prediction 101 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0972 Ssu-Chr1 21197938 21202145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0972 22 201 Eukaryotic Initiation Factors Gene Family AT2G36660 29.787 2.04e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0972 K14411 - tcc:18597296 590.497