Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0970 ATGGTTTCGCTGGAGGAATCTCGCTCGAATTCGAGCCGTTTCCCCTTGGCGAGGAGTTACCAGTACCATTCCTCGGTTTCGTCCAAAACGCAGCGTCACATCGGAAGGTCCATGCGCACGATACGCTCCAATTTCTTCCAAGACGACACCAGCAGCTGCTCCTTCACCGAGAAATCCACGTGTCTATCGGAGAACCTCACCGACTCCGTCGTCGACCTCCGCCTCGGCGAGCTCGCGTCGCGGAACAACAAATCGGGGAAGTCCTCGCCGGCGGAGGAGGACCTCCTCGACCTCTCGCAGGCCTTCAGCGACTTCTCCGCCTGCAGCAGCGACATCTCCGGCGAGCTGCAGCGCCTCGCGACGCTGCCGTCGCCGCAGAAGAGCGACTTCTCCGGCGAGGCGGCGCCGGAGCCGGAGGCCGAGCCCTGCGCGGGGTTCCTGCAGAGGGAGAGCTTCTCCACGGAGATTATCGAGAGCATCTCGCCGGAGGATCTCCAGCCGACGGTGAAGATTTGCGTCGACGGCCTCCAGTCGCAGTCGGTTGCGGTGAAGCGCTCCGCGGCGGCGAAGCTGAGACTCTTGGCGAAGAACCGCGCCGACAACCGCGTTCTGATCGCGGAGTCCGGCGCGGTGCCGTTGCTCGTTCCTCTGCTCCGGTGCAGCGATCCGTGGACGCAGGAACACGCGGTGACGGCGCTGCTGAACCTCTCTCTCCACGAGGACAACAAGATGCTGATAACCAATGCCGGGGCGGTGAAGTCGCTGATTTATGTGCTGAAAACGGGAACGGAAACCTCGAAGCAGAACGCGGCGTGCGCGCTTCTGAGTCTGGCGCTGGTGGAAGAGAACAAGAGCTCGATCGGGGCCTCGGGGGCGATCCCGCCGCTGGTTTCGCTGCTGCTGAGCGGTTCCAACAGAGGGAAGAAGGACGCGCTGACGACGCTGTATAAGCTGTGTTCGGTGAGGCAGAACAAGGAGAGGGCGGTGAGCGCCGGCGCGGTGAAGCCGCTGGTGGAGCTCGTGGCGGAGCAAGGGACCGGCATGGCGGAGAAGGCCATGGTGGTGCTCAACAGCTTGGCGGGGATTCAGGAAGGGAAGGACGCGGTTGTGGAGGAAGGTGGAATTGCTGCTCTTGTGGAGGCTATTGAAGATGGGTCTGTGAAGGGGAGGGAGTTTGCGGTTTTGACCCTTCTTCAGCTCTGTGCTGACAGTGTCAGAAACAGAGGGTTTCTTGTTAGAGAGGGTGGGATTCCTCCTCTCGTTGCTCTTTCTCAGACTGGGAGTGTTCGAGCTAAGCACAAGGCTGAAACGCTTCTTCGATATTTGAGGGAATCAAGACAAGAGGCATCTACTTCGAGTTCTTAG 1365 0.6073 MVSLEESRSNSSRFPLARSYQYHSSVSSKTQRHIGRSMRTIRSNFFQDDTSSCSFTEKSTCLSENLTDSVVDLRLGELASRNNKSGKSSPAEEDLLDLSQAFSDFSACSSDISGELQRLATLPSPQKSDFSGEAAPEPEAEPCAGFLQRESFSTEIIESISPEDLQPTVKICVDGLQSQSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPLLVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLSGSNRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEQGTGMAEKAMVVLNSLAGIQEGKDAVVEEGGIAALVEAIEDGSVKGREFAVLTLLQLCADSVRNRGFLVREGGIPPLVALSQTGSVRAKHKAETLLRYLRESRQEASTSSS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0970 454 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 209 251 IPR000225 GO:0005515
Ssu1g0970 454 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 451 - -
Ssu1g0970 454 Gene3D - 152 453 IPR011989 -
Ssu1g0970 454 PANTHER U BOX DOMAIN-CONTAINING 6 451 - -
Ssu1g0970 454 SMART arm_5 321 361 IPR000225 GO:0005515
Ssu1g0970 454 SMART arm_5 280 320 IPR000225 GO:0005515
Ssu1g0970 454 SMART arm_5 404 444 IPR000225 GO:0005515
Ssu1g0970 454 SMART arm_5 362 402 IPR000225 GO:0005515
Ssu1g0970 454 SMART arm_5 239 279 IPR000225 GO:0005515
Ssu1g0970 454 SMART arm_5 198 238 IPR000225 GO:0005515
Ssu1g0970 454 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 291 333 IPR000225 GO:0005515
Ssu1g0970 454 SUPERFAMILY ARM repeat 166 443 IPR016024 -
Ssu1g0970 454 Pfam Armadillo/beta-catenin-like repeat 282 320 IPR000225 GO:0005515
Ssu1g0970 454 Pfam Armadillo/beta-catenin-like repeat 200 237 IPR000225 GO:0005515
Ssu1g0970 454 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 332 374 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0970 Ssu-Chr1 21176256 21178067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0970 109 447 U-box Gene Family AT2G23140 44.857 1.55e-83 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0970 - - gmx:100818658 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0116 6 1943155 1944899 Ssu1g0970 1 21176256 21178067 PCT