Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0959 ATGTCCGTCCCCGTCGATGACGCCACCCTAGTCTCCGTCACAATGAAGAAACCCGCAGAACCGTCTCGCTCCGTTCCGTGGCAGTACACGTTCTTCGTCCGCCCGGTGTCGACGGGCAGCAGCATGGTTTTTACCGGTTACCCGGAAGAGTCAGTGAAATCGGTCCTCTACAGGGTCGCGTGGATAACCGGAATACCGGTTTGCGAGCTGAGGATGATATACAGAGGGAAACAGCTTCAATTGGAGCAGACTCTGGAACAGTGCGGAATCGAGAACGATTCACACCTCCACCTCGTTGGTCACTTGCGTAGCGGAGGGTACCCCGCGGCGGGGCGCATAATCGATTACATGGTTTCCGTGCTCGCGCACGTGTGCGGCGGCGAAACGGTGCGTTACGATTTGGGGATTATTAACGTTCTCACCACGCGCCACTTCGGCCTCCCCGGTTTCGCGGAGGTTTACGCGTCTTCGAGGGCGCCGATGATGCTCGTCTCGCTCTACCTGCCCCCGCGTGGCGGCGGCGGCAAGCACCGTTCCGCCGCCGAGGCTTGCATAAGCCATTTCATGAGCTGCTGTCGCGCGAAGGCGGCGCAGGGTGCTTCCGCCGGCGCGGTGTTGGAGTTCTGCAAACAGCTTCGGAGGTTCGGGTGTGAATGTGACGATGCTTTGTATGTGTCGTGTCGGAACACTTTGGGGTTTTTGTTGGGGACCTTTGGGGTTTCCTATGGTTCTGGGAGTGTGAAACAGAGGGTTTCGCTTCGTGATGTTTTCTCCTTTGTTCCCGAGCTTGCGGAGAGGTTGTTGATGGGTTTGAGTAATAGTATAAGGTGTCCCAGCACCAGCTTGAGGCCCTCGTTGGGAGAGGTTATGGATTTGGGAGTATTCGTGAACCCTTTAAGGAGTAGAATTATGGTGCAGCAGGGTTTGGGGAGTTTTGTGAGTGATGATGGAGGATGTGATGTGGAGGAGGGGGATCAATTGCGTGCAGAAGAGGTTGATTATCTTAGGGTTATGTTTATTCGGTTGTTGAGCAAAATGGATGAGTGTTTTCGCGTCATGGCGGAATGCTTGGCTGGCAAGGAACAAGGGGGGTGGGATGTTGTGTTGTATAAAGGCTGGTCTGAGTATCTGAATGTCTTGAAGGAGTTGTATGACACTTCTAAGGTCtttgatgatgctgaggaaacGTTTTGGAGAGTTTTGAGGCATCATAGAAGTATGTTGTCTGTGCTTGTTGTTGGGTTTGTGAAGAAAGGTGGCGATCATCGGTGGATTCTTGAGAACAAAAGTGTGACCAATTTTGAGTGTAGGAGGCATTTGGCAATGATGCTGTTCCCTGCTGTGCGAGAAGACTATGACCTGTTTCATGAGATGCTTATTGATAGGTCTCAGTTACTGGCTGAATCTTTCGAGTACATAGGAAAAGCGAAGCCTGAGTCTCTGCGTTCTGGTCTGTTTATGGAGTTCAAAAATGAGGAAGCTACAGGGCCAGGTGTGCTGCGGGAGTGGTTTGTTCTGGTGTGTCGCGCAATATTTAATCCACAAAATGCTCTTTTTTTGGCTTGCCCCAATGACTGCAGGAGATTTTATCCGAATCCTGCATCCAAGGTACATCCTCTGCACCTTGAGTACTTCAGGTTCTCTGGTCGTATTATTGCATTGGCTTTGATGAGAAAGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCATGCAATTGGCTGGAAACTATGTTACCTTAGAAGATATACGGGATGCAGATCCTTACTTGTATAGAAGCTGCAAGCAAATATTGGAGATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGATGGAGGTTTTAGGATGCAGGAAAGTGGTTGAGCTTTGCCCTGGTGGGAAAAGCATTGTAATGAATAGTAAGAACAGGGAGAAGTATGTTGATCTTCTTATACAGAATTGTTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAGGGTTTTGCTGATATTCTTTCCAACTCAAAGCTCCAACAGTTCTTCCAATGTTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAAATACCATTTCTATTGAAGATTGGAAGGCACATACCAAGTACAAGGGCTATAAAGAGACTGATCGTCAGATATCTTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCAAAACAAAGGAAtgctcttcttttcttttggacaTCTGTGAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCCCATCTATACATTTGCAGGTCTGTGGAACCTGGCAATCGCCTGCCCTCATCTCACACATGCTTTTTCGAGCTGTGTTTCCCCCGGTATTCATCTATGGCTGTCATGGAAGATCGCCTTGGAGTCATCACTCAAGAACACATTGGTTGCAGTTTTGGTACCGGTTAA 2451 0.4757 MSVPVDDATLVSVTMKKPAEPSRSVPWQYTFFVRPVSTGSSMVFTGYPEESVKSVLYRVAWITGIPVCELRMIYRGKQLQLEQTLEQCGIENDSHLHLVGHLRSGGYPAAGRIIDYMVSVLAHVCGGETVRYDLGIINVLTTRHFGLPGFAEVYASSRAPMMLVSLYLPPRGGGGKHRSAAEACISHFMSCCRAKAAQGASAGAVLEFCKQLRRFGCECDDALYVSCRNTLGFLLGTFGVSYGSGSVKQRVSLRDVFSFVPELAERLLMGLSNSIRCPSTSLRPSLGEVMDLGVFVNPLRSRIMVQQGLGSFVSDDGGCDVEEGDQLRAEEVDYLRVMFIRLLSKMDECFRVMAECLAGKEQGGWDVVLYKGWSEYLNVLKELYDTSKVFDDAEETFWRVLRHHRSMLSVLVVGFVKKGGDHRWILENKSVTNFECRRHLAMMLFPAVREDYDLFHEMLIDRSQLLAESFEYIGKAKPESLRSGLFMEFKNEEATGPGVLREWFVLVCRAIFNPQNALFLACPNDCRRFYPNPASKVHPLHLEYFRFSGRIIALALMRKVQVGIVFDRVFFMQLAGNYVTLEDIRDADPYLYRSCKQILEMDADFIDSDALGLTFVREMEVLGCRKVVELCPGGKSIVMNSKNREKYVDLLIQNCFVTSISEQVSHFAKGFADILSNSKLQQFFQCLELEDLDWMLHGSENTISIEDWKAHTKYKGYKETDRQISWFWEIVGRMSAKQRNALLFFWTSVKYLPVEGFRGLASHLYICRSVEPGNRLPSSHTCFFELCFPRYSSMAVMEDRLGVITQEHIGCSFGTG 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0959 816 CDD HECTc 456 814 IPR000569 GO:0004842
Ssu1g0959 816 SMART ubq_7 29 101 IPR000626 GO:0005515
Ssu1g0959 816 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 23 814 - -
Ssu1g0959 816 Pfam Ubiquitin family 37 103 IPR000626 GO:0005515
Ssu1g0959 816 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 23 814 - -
Ssu1g0959 816 Gene3D Hect, E3 ligase catalytic domains 459 691 - -
Ssu1g0959 816 Pfam HECT-domain (ubiquitin-transferase) 506 807 IPR000569 GO:0004842
Ssu1g0959 816 ProSiteProfiles Ubiquitin domain profile. 29 105 IPR000626 GO:0005515
Ssu1g0959 816 SUPERFAMILY Ubiquitin-like 32 108 IPR029071 -
Ssu1g0959 816 SMART hect_3 475 814 IPR000569 GO:0004842
Ssu1g0959 816 ProSiteProfiles HECT domain profile. 477 816 IPR000569 GO:0004842
Ssu1g0959 816 Gene3D - 28 106 - -
Ssu1g0959 816 Gene3D Hect, E3 ligase catalytic domain 577 659 - -
Ssu1g0959 816 SUPERFAMILY Hect, E3 ligase catalytic domain 447 801 IPR035983 GO:0004842
Ssu1g0959 816 Gene3D Hect, E3 ligase catalytic domain 699 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0959 Ssu-Chr1 20939073 20945919 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0959 - - gmx:100789233 966.452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0126 6 2089189 2094893 Ssu1g0959 1 20939073 20945919 PCT