Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0944 ATGGCTGGGTCATGTTTCCATGGGCTTAGGCCAAGGAGGTCTAAGAGTAAACCTTTAGCAGACCCTTCATCTTCATCCAAGACCCGGTTGGAGTGTGACGTGGAGAACGTGGAAAGGAAGAGATTTGATAGCATGGAATCGTGGTCCATGATATTGGACTCAGTGGAGACATGGGAGGCTTCAAAGGAGGACCTGGAGGGGGAGCAACAGGAATGGACTGCAGACCTGTCACAGCTTTTTATAGGTAACAAGTTTGCTTCTGGTGCTCACAGTCGAATTTACCGTGGAATCTACAAGCAGACAGCTGTTGCTGTGAAAATGGTGAGGATTCCATCCCAGGATGAGGAGAGAAAGGCCTTACTGGAGGAGCAATTTAACTCTGAAGTGGCTTTACTTTCACGTCTCTTTCATCATAACATAGTGCAGTTTATTGCAGCATGTAAAAAACCGCCCGTGTACTGTATCATAACAGAATACATGTCACAAGGGACTCTGAGGATGTATCTGAACAAGAAAGGGCCATACTCGCTCTCAATGGAAACAATACTAAGGTTAGCTCTAGATATATCAAGGGGTATGGAGTACCTTCATTCACAAGGTGTGATTCACAGAGACCTGAAGTCAAGTAATTTGCTTCTCAACGATGAGATGAGAGTTAAGGTGGCGGATTTTGGCACATCTTGTCTTGAAACACGATGCCGCAAAAGCAAAGGGAACTCGGGAACATATCGTTGGATGGCACCAGAGATGGTTAAGGAAAAACCTTATACTCGTAAAGTTGATGTGTACAGTTTTGGTATTGTGCTTTGGGAGCTCACAACTGCTCTACTTCCCTTCCAAGGAATGACCCCAGTGCAAGCTGCTTTTGCTGTGGCTGAGAAGAATGAAAGGCCTCCTCTGCCAGCTAGTTGTCAACCAGCACTAGCACATCTGATAAAGCTTTGCTGGTCAACAAACCCCTCGAAAAGGCCAGATTTCAGTGATATTGTGTCTACTTTGGAGAAGTACGATGAGTGTATGAAAGAGGGCCTACCACTAAGTCATCATTCAGGGCTAGTAAGCAGAAATGTAATTATTGAACGCCTAAAAGGCTGTGTTTCTATGAGCTCCTCCATACCTGTACATGCCTGA 1131 0.4527 MAGSCFHGLRPRRSKSKPLADPSSSSKTRLECDVENVERKRFDSMESWSMILDSVETWEASKEDLEGEQQEWTADLSQLFIGNKFASGAHSRIYRGIYKQTAVAVKMVRIPSQDEERKALLEEQFNSEVALLSRLFHHNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKGPYSLSMETILRLALDISRGMEYLHSQGVIHRDLKSSNLLLNDEMRVKVADFGTSCLETRCRKSKGNSGTYRWMAPEMVKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKLCWSTNPSKRPDFSDIVSTLEKYDECMKEGLPLSHHSGLVSRNVIIERLKGCVSMSSSIPVHA 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0944 376 Pfam Protein tyrosine and serine/threonine kinase 81 333 IPR001245 GO:0004672|GO:0006468
Ssu1g0944 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Ssu1g0944 376 Gene3D Transferase(Phosphotransferase) domain 1 162 351 - -
Ssu1g0944 376 Coils Coil 55 75 - -
Ssu1g0944 376 SMART serkin_6 79 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0944 376 CDD STKc_MAP3K-like 86 333 - -
Ssu1g0944 376 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 364 - -
Ssu1g0944 376 ProSiteProfiles Protein kinase domain profile. 79 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0944 376 MobiDBLite consensus disorder prediction 1 31 - -
Ssu1g0944 376 PRINTS Tyrosine kinase catalytic domain signature 304 326 IPR001245 GO:0004672|GO:0006468
Ssu1g0944 376 PRINTS Tyrosine kinase catalytic domain signature 260 282 IPR001245 GO:0004672|GO:0006468
Ssu1g0944 376 PRINTS Tyrosine kinase catalytic domain signature 241 251 IPR001245 GO:0004672|GO:0006468
Ssu1g0944 376 PRINTS Tyrosine kinase catalytic domain signature 157 170 IPR001245 GO:0004672|GO:0006468
Ssu1g0944 376 PRINTS Tyrosine kinase catalytic domain signature 195 213 IPR001245 GO:0004672|GO:0006468
Ssu1g0944 376 SUPERFAMILY Protein kinase-like (PK-like) 55 333 IPR011009 -
Ssu1g0944 376 Gene3D Phosphorylase Kinase; domain 1 68 161 - -
Ssu1g0944 376 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0944 Ssu-Chr1 20738040 20742753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0944 1 376 MAP Kinase Kinase Kinase AT1G62400 77.665 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Ssu1g0944 PK_Tyr_Ser-Thr 1.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0944 - - gmx:100810171 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0138 6 2220298 2224448 Ssu1g0944 1 20738040 20742753 PCT