Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0936 ATGAGTCAACTCGGTGTGGCGTTGCAGGACTCGCTGCGGACGCAGAGGGAGCCGAGAACGATTTTAGGGTTGCTGAGGGAGCAAATGGACGGAGTGGATGGAGGGACACGCCGGAGGCGTGGCTTCAAGGAACGGTTCGGATTCATCGGGATGGGTTGTTGTGGGGCCACGTGGAGGTTCCGTTCTGATACTCTGAGTGTTACTCAGGGAGAACGAGAACGAGAACGagaacaagaacaagaacaacCGCCGCAGCGGGAAACGGATCCGGGTCCGGAGTGCGTGGGTCCGGGTCCGGCGGGTTCGGGGATGAATCTCGCGGCGGCGTTGGCGGCGGAGCGGCAGCTCCGGGGGCCGCAGGAGGAGGCGGTGAGGGCGCCCGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTGGAGGAGGCGGAGGGAGGGGACGCGGCGGAGAAGGAGGAgaatggaggaggaggaggaggggtTGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGTGCGGCGTTCATCCCATGTGGGCACACTTTTTGCAGGGTGTGTTCCAGGGAACTGTGGCTTAATCGAGGCTCTTGTCCCCTTTGCAATCGCTCCATCCTCGAGATTCTCGACATTTTCTAG 648 0.5833 MSQLGVALQDSLRTQREPRTILGLLREQMDGVDGGTRRRRGFKERFGFIGMGCCGATWRFRSDTLSVTQGEREREREQEQEQPPQRETDPGPECVGPGPAGSGMNLAAALAAERQLRGPQEEAVRAPGTPWRVSLMRLLEEAEGGDAAEKEENGGGGGGVVGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0936 215 Pfam Zinc finger, C3HC4 type (RING finger) 164 209 - -
Ssu1g0936 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 214 IPR013083 -
Ssu1g0936 215 ProSiteProfiles Zinc finger RING-type profile. 167 205 IPR001841 -
Ssu1g0936 215 SUPERFAMILY RING/U-box 162 212 - -
Ssu1g0936 215 SMART ring_2 167 204 IPR001841 -
Ssu1g0936 215 MobiDBLite consensus disorder prediction 65 102 - -
Ssu1g0936 215 CDD RING-HC 167 204 - -
Ssu1g0936 215 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 19 215 - -
Ssu1g0936 215 MobiDBLite consensus disorder prediction 66 86 - -
Ssu1g0936 215 PANTHER OS01G0917900 PROTEIN 19 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0936 Ssu-Chr1 20572930 20573577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0936 21 215 C3H Transcription Factor Family AT4G22250 56.436 3.74e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0936 - - gmx:100804292 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0145 6 2310955 2311542 Ssu1g0936 1 20572930 20573577 PCT