Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0927 ATGGAACGTTTAGCCAGGTCAGCTCGAGCATGGCGTTGGCATTGGCGTTCATTTTCCTCTTTCCAAACCCTAGCTTCTCGCTCCTCCCCTCGTTCTTCCTATCCCAAGTTTGCGTCTACTTGGTGCACCTCCTCCGTGTCTGATGTTTCGAGTTCCAGAGTTTTGCGCGAGGGTTATTCGTTGCTTCCAGTTGTCTTAGCTGGTATTTTCGGAACTGGATTGGTGGAAGCGGCATATGCGGATAATGGTGGCGTGGATGTCCAAGAAATTGCTAAGAAGGAGCGCGAACGAATTGAGGAGTTGCTTAGAAGTAGAGGAATTCGATATGGTTCTTATCCTCGCTTCACTGTTGCCGTTAAAGGCCAAAAGATCAGTATTAAGTTTCAAATTCCGCCTGATTGCGAAGTTTCACAACTTATTGCAAATCTTGCTGCACATCTTGGAATGAAAGCTGAGGGCCATGGCGGTGGTTCAGACATGTTATTACGAGCTTGGGACAGCACAGTTGCTTGGCAACTTACCCTTACTCATCCATCCAAACCAAAAAATATGCAAGGGAAAGATCTGTCTTCAACAGATATAAATGCAGATGATAGAGATCTATGTATACTCatatttcattctctcattgGCTTAGATAAAGCTGAAATTGAATTCATTAAGCAAGGGAACTTGAGTCCTGAAGAGCTTGATGCTTTCATCTCTGTTTTAAAATTAGCTGGTAACAAGTTGGGACAAAGAAGCACCCTGGAAAGAAAACCGAGGGAAGAGACTGAAAAGGTGCCATCTGTAGATAAATCTATTTCTGATCTTGAGGGTATGGGAGTGAGAATTTATGGACTTGATGAACCCGTAGGTATATCAAATGATGGTGAGATATCATGGGACAACATTGCTGGTTATGAACATCAAAAACGAGTAATAGAAGATACAATACTATTGGCTTTACATAGTCCTGAAGTATATGATGATATTGCTCGAGGGACTCGTCATAAGTTTGAGTCAAACAGACCTCGAGCTGTGCTATTCGAAGGTCCACCAGGTACAGGGAAAACTTCCTGTGCTCGTGTTATTGCCAATCAAGCGGGTGTCCCTTTGCTATATGTTCCACTTGAGGCAATAATGTCTGAATTATACGGTAAAAGTGAACGTCTTCTGGGGAAAGTGTTTTCGCTTGCAAACAATCTTCCTAATGGTGCTATTATATTTCTGGATGAGATTGATTCTTTTGCTGCTGCTCGTGACAGTGAAATGCATGAAGCTACACGTAGAATATTGTCAGTCTTATTGCGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTAGTTGTCATTGCTGCCACAAATAGAAAGGAAGACCTTGATCCTGCGTTAATCAGTCGGTTTGATAGTATGATCTCTTTTGGCTTACCCGATCATCGGAATCGTCAGGAAATAGCATCCAAATATGCAAAGCACCTGTCCAAACCCGAACTAGATGAACTTGCAAGGGTTACAGAAGATATGTCTGGAAGAGATATTAGAGATATTTGTCAGCAAGCAGAACGATCATGGGCGtcaaagATTATTCGAGGGCAAGTTCCTAAGGACGGCGAACAAGCGCATCTTCCACCTTTGCAAGAATATATAGAGTGCGCCACGAGTCGGCAGGAGGCGCTGCGTGGTGCTGCCGCAAACAGGAAGTTCCGAAGCTCTTCCCGCCGCAGGATTCTAAGTGACTGA 1722 0.4326 MERLARSARAWRWHWRSFSSFQTLASRSSPRSSYPKFASTWCTSSVSDVSSSRVLREGYSLLPVVLAGIFGTGLVEAAYADNGGVDVQEIAKKERERIEELLRSRGIRYGSYPRFTVAVKGQKISIKFQIPPDCEVSQLIANLAAHLGMKAEGHGGGSDMLLRAWDSTVAWQLTLTHPSKPKNMQGKDLSSTDINADDRDLCILIFHSLIGLDKAEIEFIKQGNLSPEELDAFISVLKLAGNKLGQRSTLERKPREETEKVPSVDKSISDLEGMGVRIYGLDEPVGISNDGEISWDNIAGYEHQKRVIEDTILLALHSPEVYDDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEAIMSELYGKSERLLGKVFSLANNLPNGAIIFLDEIDSFAAARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDSMISFGLPDHRNRQEIASKYAKHLSKPELDELARVTEDMSGRDIRDICQQAERSWASKIIRGQVPKDGEQAHLPPLQEYIECATSRQEALRGAAANRKFRSSSRRRILSD 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0927 573 Pfam ATPase family associated with various cellular activities (AAA) 341 469 IPR003959 GO:0005524|GO:0016887
Ssu1g0927 573 Gene3D - 292 470 IPR027417 -
Ssu1g0927 573 ProSitePatterns AAA-protein family signature. 442 461 IPR003960 GO:0005524|GO:0016887
Ssu1g0927 573 SMART AAA_5 337 472 IPR003593 -
Ssu1g0927 573 CDD AAA 334 470 - -
Ssu1g0927 573 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 43 556 - -
Ssu1g0927 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 520 IPR027417 -
Ssu1g0927 573 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 43 556 - -
Ssu1g0927 573 Gene3D - 471 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0927 Ssu-Chr1 20399299 20407360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0927 337 537 Calmodulin-binding Proteins AT3G56690 36.058 1.27e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0927 - - gmx:100803362 1002.28