LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g0925	ATGGAGGGTAGTAGTTCTAATGGCACTTCTTATTtgttggcttttggagaaaacAGTGGTGGGCTATGCCCAATGACGATGCCTTTGGTGACTTCCCATCATGGTGGTCATCATCCAATAAATCCTAATCCtagtaataatactaataataatgcaaaCACAAACTGTCTCTTCATTCCCAACTGCAGTAACAGTGGAACTCCTTCTATCATGCTCGACaataaccacaacaacaacactgAAAACACCAACAACAACACTGGGTTAGGGTACTATTTCATGGAGAgtgaccaccaccaccaccaccgcaaCAACAATGGAagctcctcctcctcttctgcTGTCAAGGCTAAGATTATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAGAAGGTTGGAGCCCCACCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCTTCTGCAGTGACAATGGCAGGTGATGCAGCTGGATCAAGCTGCATAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAGGCCTACTGTGAGATGCTGACTAAGTACGAGCAAGAACTCTCCAAACCCTTAAAGGAAACCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAAAATCTTACAATTTCTTCTTCGGACTTTGCTTGTAATGAGGGTGCTGATAGGAATGGATCACCTGAAGACGATGTTGATCTACACAACATCATAGATCCCCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGCAAGTACAGCGGATACTTGGGCAGTCTAAAGCAGGAATTcatgaagaagaggaaaaaaggaaagCTACCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGTAGACATTACAAATGGCCTTACCCATCCGAATCACAGAAGCTGGCTCTTGCAGAGTCGACAGGTCTGGATCAGAAGCAAATCAACAATTGGTTTATTAATCAAAGGAAGCGGCATTGGAAGCCTTCAGAGGACATGCAGTTGGTGGTGATGGATCCAAGCCACCCACACTATTACATGGATAATGTTCTAGGTCTGGGCGGTCCCTTTCCCATGGATCTCTCCCATCCCATGCTCTAG	1113	0.4061	MEGSSSNGTSYLLAFGENSGGLCPMTMPLVTSHHGGHHPINPNPSNNTNNNANTNCLFIPNCSNSGTPSIMLDNNHNNNTENTNNNTGLGYYFMESDHHHHHRNNNGSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVTMAGDAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKETMLFLQRIECQFKNLTISSSDFACNEGADRNGSPEDDVDLHNIIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQLVVMDPSHPHYYMDNVLGLGGPFPMDLSHPML	370

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu1g0925	370	SMART	KNOX1_2	113	157	IPR005540	GO:0003677\|GO:0005634
Ssu1g0925	370	SMART	ELK_2	250	271	IPR005539	GO:0003677
Ssu1g0925	370	SMART	KNOX2_2	164	215	IPR005541	GO:0003677\|GO:0005634
Ssu1g0925	370	Gene3D	-	275	337	-	-
Ssu1g0925	370	Pfam	Homeobox KN domain	290	329	IPR008422	GO:0003677\|GO:0006355
Ssu1g0925	370	ProSitePatterns	'Homeobox' domain signature.	308	331	IPR017970	GO:0000981\|GO:0006355
Ssu1g0925	370	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	1	359	-	-
Ssu1g0925	370	PANTHER	HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1	1	359	-	-
Ssu1g0925	370	ProSiteProfiles	ELK domain profile.	250	270	IPR005539	GO:0003677
Ssu1g0925	370	Pfam	ELK domain	250	271	IPR005539	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g0925	Ssu-Chr1	20357346	20364456	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g0925	115	370	Homeobox Transcription Factor Family	AT1G62360	78.788	7.53e-131	378

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Ssu1g0925		KNOX2	7.6e-20	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g0925	-		-	gmx:100805837	611.298

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu6g0150	6	2417084	2421763	Ssu1g0925	1	20357346	20364456	PCT

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