Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0925 ATGGAGGGTAGTAGTTCTAATGGCACTTCTTATTtgttggcttttggagaaaacAGTGGTGGGCTATGCCCAATGACGATGCCTTTGGTGACTTCCCATCATGGTGGTCATCATCCAATAAATCCTAATCCtagtaataatactaataataatgcaaaCACAAACTGTCTCTTCATTCCCAACTGCAGTAACAGTGGAACTCCTTCTATCATGCTCGACaataaccacaacaacaacactgAAAACACCAACAACAACACTGGGTTAGGGTACTATTTCATGGAGAgtgaccaccaccaccaccaccgcaaCAACAATGGAagctcctcctcctcttctgcTGTCAAGGCTAAGATTATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAGAAGGTTGGAGCCCCACCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCTTCTGCAGTGACAATGGCAGGTGATGCAGCTGGATCAAGCTGCATAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAGGCCTACTGTGAGATGCTGACTAAGTACGAGCAAGAACTCTCCAAACCCTTAAAGGAAACCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAAAATCTTACAATTTCTTCTTCGGACTTTGCTTGTAATGAGGGTGCTGATAGGAATGGATCACCTGAAGACGATGTTGATCTACACAACATCATAGATCCCCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGCAAGTACAGCGGATACTTGGGCAGTCTAAAGCAGGAATTcatgaagaagaggaaaaaaggaaagCTACCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGTAGACATTACAAATGGCCTTACCCATCCGAATCACAGAAGCTGGCTCTTGCAGAGTCGACAGGTCTGGATCAGAAGCAAATCAACAATTGGTTTATTAATCAAAGGAAGCGGCATTGGAAGCCTTCAGAGGACATGCAGTTGGTGGTGATGGATCCAAGCCACCCACACTATTACATGGATAATGTTCTAGGTCTGGGCGGTCCCTTTCCCATGGATCTCTCCCATCCCATGCTCTAG 1113 0.4061 MEGSSSNGTSYLLAFGENSGGLCPMTMPLVTSHHGGHHPINPNPSNNTNNNANTNCLFIPNCSNSGTPSIMLDNNHNNNTENTNNNTGLGYYFMESDHHHHHRNNNGSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAVTMAGDAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKETMLFLQRIECQFKNLTISSSDFACNEGADRNGSPEDDVDLHNIIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQLVVMDPSHPHYYMDNVLGLGGPFPMDLSHPML 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0925 370 SMART KNOX1_2 113 157 IPR005540 GO:0003677|GO:0005634
Ssu1g0925 370 SMART ELK_2 250 271 IPR005539 GO:0003677
Ssu1g0925 370 SMART KNOX2_2 164 215 IPR005541 GO:0003677|GO:0005634
Ssu1g0925 370 Gene3D - 275 337 - -
Ssu1g0925 370 Pfam Homeobox KN domain 290 329 IPR008422 GO:0003677|GO:0006355
Ssu1g0925 370 ProSitePatterns 'Homeobox' domain signature. 308 331 IPR017970 GO:0000981|GO:0006355
Ssu1g0925 370 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 359 - -
Ssu1g0925 370 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 1 359 - -
Ssu1g0925 370 ProSiteProfiles ELK domain profile. 250 270 IPR005539 GO:0003677
Ssu1g0925 370 Pfam ELK domain 250 271 IPR005539 GO:0003677
Ssu1g0925 370 SUPERFAMILY Homeodomain-like 272 348 IPR009057 -
Ssu1g0925 370 ProSiteProfiles 'Homeobox' domain profile. 270 333 IPR001356 GO:0003677
Ssu1g0925 370 Pfam KNOX1 domain 114 153 IPR005540 GO:0003677|GO:0005634
Ssu1g0925 370 SMART HOX_1 272 337 IPR001356 GO:0003677
Ssu1g0925 370 Pfam KNOX2 domain 167 214 IPR005541 GO:0003677|GO:0005634
Ssu1g0925 370 CDD homeodomain 282 334 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0925 Ssu-Chr1 20357346 20364456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0925 115 370 Homeobox Transcription Factor Family AT1G62360 78.788 7.53e-131 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu1g0925 KNOX2 7.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0925 - - gmx:100805837 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0150 6 2417084 2421763 Ssu1g0925 1 20357346 20364456 PCT