Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0923 ATGGCTCGTGCCcgtctccctctccctctctttctctctctgatCCTCGTTGCTCTTCCTCTCGCCCTCGCCAACACCAACCCTTCTGAtgTTCAAGCTCTTGAGGTGATGTACAATGCGTTGAATAGTCCAACTCAGCTAACGGGTTGGAAAATCGGTGGTGGTGATCCGTGTGAAGAGTCATGGAAAGGGGTAACGTGTGAGGGTTCAGCCGTTGTTTCCATTGAGCTCTCAGGTTTAGGACTCGATGGGACTCTGGGGTACCTGCTTTCGGACCTTATGTCACTCAGAAAGCTTGACTTAAGTGACAACAAGATCCATGATACAATTCCCTACCAGTTGCCGCCAAATCTTACAAGCCTGAATcttgcaaaaaataatttatctggAAATCTTCCTTATTCCATGTCTGCCATGTCTTCACTCAATTATTTGAATTTAAGCAATAATGCGCTCTCCATGACAGTTGGTGATATTTTTGCTAGCCTTTCAGATCTTGGTACCCTGGATCTATCATTCAATAACTTCTCTGGGGATCTTCCTCCTTCATTTGGTTCATTGTCCAATCTTTCTTCTCTtttcTTGCAGAAGAACCAGTTGACTGGCTTTCTTAGTGTTCTCGTTGGTTTGCCTTTGGATACTTTAAATGTTGCAAACAATAATTTCAGTGGATGGATACCTCACGAGCTTAGTTCCATCCATAATTTCATATATGAtggaaattcttttgaaaacGGTCCTGCTCCTCTTCCGCCAGCATTTACTTCGCCTCCTCCCAGTGGATCTCATAGTAGTCATCATCATTCTGGATCTGGTTCACATAATAAAACCCAAGCTTCTGATAATGAAAATTCTGATGGCCATAAGGGTTTGATAGCGGGCGCCGTTGTAGGCATTGTTTTAGGTTCAGTACTGGTGGCTGCTATTGTGCTGCTTGTTCTTGTTTTCTGTATCCAGAAGCAAAAGGGGAAGAAAAAGGGTGCAAGAAATTTTAGTGGGAGCCTTCCTCGTGGAGTTATTAATGTAACTCCTCAGAGGCAAGAGCAGAGGGTAAAAAGTGCTGCCGTTGTTACAGATCTCAAGCCTCATCCGGCAGAAAATGTGACAGTTGAGAGGGTACCTGTAAAAAGTGGATCTGTAAAGCAGATGAAGTCCCCTATAACTTCCGCATCATACACAGTTGCTTCTCTCCAAAGTGCAACAAATAGCTTTAGTCAAGAATTTATTATTGGTGAAGGTTCTCTTGGCCGAGTTTATAAGGCTGATTTCCCAAATGGGAAGGTAATGGCTATTAAGAAGATTGACAACTCAGCACTGTCATTACAAGAGGAAGACAATTTTCTTGAAGCTGTTTCAAATATGTCACGCTTGCGGCACCCAAACATTGTGACATTGGCTGGATATTGTGCAGAGCATGGCCAACGGCTTCTAGTATATGAGTATATAGGAAATGGAAATCTACATGACATGCTCCATTTTGCTGAAGATAGCAGCAAGGCTTTGTCTTGGAATGCTCGTGTACGCATAGCACTTGGCACAGCCCGGGCTTTAGAGTACTTGCATGAAGTGTGCTTGCCTTCTGTTGTGCATAGAAATTTCAAATCTGCAAATATATTGCTTGATGAGGAGCTCAATCCTCACCTGTCTGACTGTGGTTTAGCTGCTTTGACACCAAACACTGAGCGGCAGGTATCAACTCAGATGGTCGGTTCATTTGGTTATAGTGCTCCCGAGTTTGCATTATCAGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGGTTATGCTGGAACTATTGACTGGTCGGAAGCCACTTGACAGTTCGCGGGCTAGATCAGAGCAGTCACTTGTGAGGTGGGCTACACCCCAACTCCATGATATAGATGCCTTGGCCAAAATGGTTGATCCTACTTTGAACGGCATGTATCCTGCAAAGTCACTGTCACGCTTCGCTGATATCATTGCCCTGTGTGTTCagCCGGAACCTGAATTTCGACCTCCGATGTCTGAGGTGGTGCAAGCATTGGTTCGGTTAGTGCAAAGAGCAAGTATGGTTAAAAGACGACCCAGTGACGAATCTGGTTTTGGTCACAAGACCCCAGACCATGAGGCCATAGACACGTCATTTTAA 2139 0.4292 MARARLPLPLFLSLILVALPLALANTNPSDVQALEVMYNALNSPTQLTGWKIGGGDPCEESWKGVTCEGSAVVSIELSGLGLDGTLGYLLSDLMSLRKLDLSDNKIHDTIPYQLPPNLTSLNLAKNNLSGNLPYSMSAMSSLNYLNLSNNALSMTVGDIFASLSDLGTLDLSFNNFSGDLPPSFGSLSNLSSLFLQKNQLTGFLSVLVGLPLDTLNVANNNFSGWIPHELSSIHNFIYDGNSFENGPAPLPPAFTSPPPSGSHSSHHHSGSGSHNKTQASDNENSDGHKGLIAGAVVGIVLGSVLVAAIVLLVLVFCIQKQKGKKKGARNFSGSLPRGVINVTPQRQEQRVKSAAVVTDLKPHPAENVTVERVPVKSGSVKQMKSPITSASYTVASLQSATNSFSQEFIIGEGSLGRVYKADFPNGKVMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHPNIVTLAGYCAEHGQRLLVYEYIGNGNLHDMLHFAEDSSKALSWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRARSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASMVKRRPSDESGFGHKTPDHEAIDTSF 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0923 712 CDD STKc_IRAK 410 681 - -
Ssu1g0923 712 Pfam Leucine rich repeat 116 176 IPR001611 GO:0005515
Ssu1g0923 712 Gene3D Phosphorylase Kinase; domain 1 366 481 - -
Ssu1g0923 712 MobiDBLite consensus disorder prediction 248 285 - -
Ssu1g0923 712 MobiDBLite consensus disorder prediction 690 712 - -
Ssu1g0923 712 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Ssu1g0923 712 Pfam Protein kinase domain 407 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0923 712 ProSiteProfiles Leucine-rich repeat profile. 95 116 IPR001611 GO:0005515
Ssu1g0923 712 Gene3D Ribonuclease Inhibitor 26 285 IPR032675 -
Ssu1g0923 712 ProSiteProfiles Protein kinase domain profile. 404 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0923 712 SUPERFAMILY Protein kinase-like (PK-like) 382 678 IPR011009 -
Ssu1g0923 712 Gene3D Transferase(Phosphotransferase) domain 1 482 700 - -
Ssu1g0923 712 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 24 708 - -
Ssu1g0923 712 MobiDBLite consensus disorder prediction 259 280 - -
Ssu1g0923 712 PANTHER OS01G0253100 PROTEIN 24 708 IPR045271 GO:0004714|GO:0006468
Ssu1g0923 712 SUPERFAMILY L domain-like 27 235 - -
Ssu1g0923 712 SMART LRR_typ_2 163 186 IPR003591 -
Ssu1g0923 712 SMART LRR_typ_2 93 121 IPR003591 -
Ssu1g0923 712 SMART LRR_typ_2 139 162 IPR003591 -
Ssu1g0923 712 SMART LRR_typ_2 187 210 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0923 Ssu-Chr1 20314580 20320498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0923 139 712 Strubbelig Receptor Gene Family AT4G22130 71.478 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Ssu1g0923 Pkinase 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0923 - - gmx:100803711 1203.73