Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0920 ATGACCACAAACCCAAACAGAAAAGCAAAAACAGCCCatgttttccttctctttttgttattaattattacgaGAGTCCGAGGTAGCTGCTTTACTGGCTGCAACCTTGCTCTAGCTTCCTATTACATATGGAATGGCACAAACCTCACTTACATTAGCAACCTCTTTGGGAGGCCCACATCGGAGATTTTGAAATACAACCCAAGCGTGGAGAACCCAGACGTGATTCAAAGCCAAACGCGGATCAACGTGCCCTTCACGTGTGACTGCTTGAACGGTGTCTTTTTGGGCCACACTTTCTCGTTCGCGACCCAACACGGAGACACCTACAAAGTAATTGCTGAGGTTGGGTTCTCAAACCTCACGACCGAGGATTGGGTGAGCAGGGTCAACAGATACCCACCTAATCAGATACCCGACAACGTCAACATCAACGTCACCGTCAACTGCTCCTGCGGAGACCGACACGTGTCCAAGGATTATGGACTTTTTGCGACATACCCGCTTCGGGTCGGTGACAACTTGCACCGGATTGCGGCCGAATCCGGTGTGCCGGCGGAGCTGCTGCTAAGGTACAACCCCACCTCGGATTTCAGCGCTGGCAATGGACTCGTGTTTGTGCCGGCTAAAGATGAACACGGAAACTTTCCACCAATGCAGCGGGGATCAGgaATATCTAGTGGAGCCATTGCTGGCATAGCTGTTGGAGGAGCTGTTGGGATCTTACTTTTGGCACTTATTCTATATGTTGGACTATACAGAAGAAAGAAAGTGGCTGAGGTATCCCTTCTCCCTGTCCCAGAAGCATCTGAAGATCAATGTAGTCCACTCCGGCATGGTATTGGTTGTGGAAGCAGCTTGGACAAGGCATCAGAATCTTCTGTTGTTTCTTCTCCAAGGTTGACAGGTATTACAGTGGACAAGTCAGTGGAGTTCTCATATCAGGAGCTAGCCAAGGCTACTGATGACTTCAGTGTGGCTAATATAATTGGTAAAGGTGGCTTTGGATCTGTTTACTATGCTGAGCTTCGGAATGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAATGAATTCCTTGCAGAACTAAAGGTCCTTACACACGTCCATCACTTGAACTTGGTGAGGTTAATAGGATACTGTGTTGAGGGCTCCTTATTTTTGGTTTATGAGTATATTGAGAACGGCAATTTAAGCCAACATTTGCGAGGCTCagGGAGGGATCCGTTAACATGGGCAGCTAGAGTTCAAATTGCCCTTGATGCAGCAAGAGGGCTGGAATACATCCATGAGCATACAGTTCCTGTCTACATCCATAGAGATATTAAATCAGCAAACATTTTGATAGACAAAAACTTCCGCGGAAAGGTTGCAGATTTTGGTCTCACAAAATTGACCGAGTATGGTAGTTCTTCATTACAAACGCGTCTTGTGGGTACATTCGGTTATATGCCTCCAGAATATGCACAATATGGTGAAGTTTCCCTCAAAATAGATGTATATGCCTTTGGAGTTGTTCTCTATGAACTCATATCTGGCAAGGCAGCTATCGTCAAGACAAACGAACCTGAGAATGAATCAAAAGGACTAGTCGGCTTGTTTGAAGAAGCTCTTGGTCTGTCAGAGCCAAAAGAAGATCTTCGTCAACTCGTTGACCCTAAGCTTGGTGACAGCTATCCTCTTGACTCGGTATTTAAGGTGTCTCAGCTTGCCAAAGCATGTACGCATGAAAACCCTCAACTTAGGCCAAGCATGAGATCAATTGTAGTTGCCTTAATGACACTTTCATCTGCAACTGAGGATTGGGATGTTGGCTCCTTCTATGAAAACCAAGCTTTAGTGCACCTAATGTCTGGAAGGTAG 1869 0.4521 MTTNPNRKAKTAHVFLLFLLLIITRVRGSCFTGCNLALASYYIWNGTNLTYISNLFGRPTSEILKYNPSVENPDVIQSQTRINVPFTCDCLNGVFLGHTFSFATQHGDTYKVIAEVGFSNLTTEDWVSRVNRYPPNQIPDNVNINVTVNCSCGDRHVSKDYGLFATYPLRVGDNLHRIAAESGVPAELLLRYNPTSDFSAGNGLVFVPAKDEHGNFPPMQRGSGISSGAIAGIAVGGAVGILLLALILYVGLYRRKKVAEVSLLPVPEASEDQCSPLRHGIGCGSSLDKASESSVVSSPRLTGITVDKSVEFSYQELAKATDDFSVANIIGKGGFGSVYYAELRNEKAAIKKMDMQASNEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGSGRDPLTWAARVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSLKIDVYAFGVVLYELISGKAAIVKTNEPENESKGLVGLFEEALGLSEPKEDLRQLVDPKLGDSYPLDSVFKVSQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVHLMSGR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0920 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Ssu1g0920 622 SUPERFAMILY Protein kinase-like (PK-like) 304 594 IPR011009 -
Ssu1g0920 622 ProSiteProfiles Protein kinase domain profile. 324 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0920 622 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-LIKE 8 622 - -
Ssu1g0920 622 CDD STKc_IRAK 330 591 - -
Ssu1g0920 622 Gene3D Phosphorylase Kinase; domain 1 305 394 - -
Ssu1g0920 622 Pfam Protein tyrosine and serine/threonine kinase 327 593 IPR001245 GO:0004672|GO:0006468
Ssu1g0920 622 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 8 622 IPR044812 GO:0019199|GO:0045087
Ssu1g0920 622 ProSiteProfiles LysM domain profile. 39 84 IPR018392 -
Ssu1g0920 622 Gene3D Transferase(Phosphotransferase) domain 1 395 606 - -
Ssu1g0920 622 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Ssu1g0920 622 SMART serkin_6 324 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0920 Ssu-Chr1 20262125 20271549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0920 16 622 Receptor kinase-like Gene Family AT3G21630 56.000 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu1g0920 PK_Tyr_Ser-Thr 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0920 - K13429 gmx:100802308 1073.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0920 1 20262125 20271549 Ssu1g0920 1 20262125 20271549 ECH