Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0919 ATGGTCACATGGCGAGCACTATGTGAAAATGTGGTTCTAGGGATCAGCTTAAATATCTCAGAAGTGAAGGCCATTGATTGCTTGGCTAGTTGTAAGATGCTGAAGCTAAAAGATTGGCCCCCTTCAGACAAGTTTGAAGATATTTTGCCTTGCCATTGTGATGAGTTTATTTGTTGCTTGCCATTTCAAGAGTATAGTGATCCTCGAGCTGGAGTCCTCAATCTTGGTGTAAAGTTGCCACCCCATGTCCTAAAGCCAGACTTGTGTCCAACAACGTATATTGCTTATGGGATTAAAGAAGAACTTGGCAGGGGGGATTCAGTAACAAAACTTCACTGTGATATGTCTGATGTAGTGAATATTTTGACACACACAGCTGAGGTAACATTAACTGATGAACAAAACTTTGTTATTTCGAAACTGAAAAAAGCACACATGGCCCAAGATGAGAAAGAGTGTTGTGCTCAAGATAGGGTTGCTGAATTCCTAAATAAAGGTCCAtgcaaagacaaaaaagaacaagaagatAAGGAGAAGTGCCCTGTTGACATCAATGGAAAGATCTTTCCAAATGATATGCCCACTATCTCTTAA 594 0.3872 MVTWRALCENVVLGISLNISEVKAIDCLASCKMLKLKDWPPSDKFEDILPCHCDEFICCLPFQEYSDPRAGVLNLGVKLPPHVLKPDLCPTTYIAYGIKEELGRGDSVTKLHCDMSDVVNILTHTAEVTLTDEQNFVISKLKKAHMAQDEKECCAQDRVAEFLNKGPCKDKKEQEDKEKCPVDINGKIFPNDMPTIS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0919 197 SUPERFAMILY Clavaminate synthase-like 35 122 - -
Ssu1g0919 197 Gene3D Cupin 1 184 - -
Ssu1g0919 197 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 33 181 IPR045109 GO:0032454|GO:0033169
Ssu1g0919 197 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 33 181 - -
Ssu1g0919 197 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 32 IPR045109 GO:0032454|GO:0033169
Ssu1g0919 197 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0919 Ssu-Chr1 20247612 20249031 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0919 K15601 K21989 gmx:100801772 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0919 1 20247612 20249031 Ssu1g0919 1 20247612 20249031 ECH
Ssu6g0154 6 2508825 2513065 Ssu1g0919 1 20247612 20249031 PCT