Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0910 ATGGCCACTTTAACCACTCTCCTAGTGCTCTCGTGCTTTCTAGTTCCCACCTTAGCTTCAGCACCGAATAGAGATTCAACAAAGGAGTTCAACGCCCTCTCCCCAATCTCAAGCTACATCCCCAAGAGTCCTGAGAATGTTGTCATGAACACAATAGACTCATGTTGGCGAGCCAAAACAGATTGGGCTTCTAACCGCCAATCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCATAGGAGGAAAGTTTGGTGATATATATGAAGTCACCGATCCCTCTGATGACCCTGTGAACCCAAAACCAGGCACACTCCGTTATGGTGCAATCCAAACACAGCCCCTTTGGATAACTTTCGCCAACGACATGGTTATCACGCTCAAGAATGAGCTTATGGTGAATAGCTACAAGACCATTGATGGGAGAGGAGCTAACGTGGAGATTGCAAATGGGCCTTGCATTACAATTCAAGGTGTTGGCCATGTCATCATGCATGGAATTAGCATTCATGATTGTAAACCGGGCCAGGCTGCCATGGTGAGGAGCACTCCTGAACATGTTGGGTATCGTGAAGGCTCTGATGGAGATGCCATCAGCATATTTGCCTCCTCCAATGTCTGGATTGACCATTGCTTTTTGGCTCGTTGCACCGATGGTCTCATTGATGTTATTCATGCCTCAACTGCTGTCACCATCTCTAACAATTACTTCACCCAGCACGACAAaGTGATACTGCTAGGACACAGCGATGAATACAGTGCGGATAGAATAATGAGAGTAACAGTAGCTTTCAACCGCTTTGGCAGTGGCTTAGTAGAAAGAATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACCGGTATGACGAGTGGCTTATGTATGCCATTGGTGGCAGTGCCGACCCTACCATTTTTAGTGAAGGGAACTATTTTATGGCTTCAAACGATTCTGCTGCAAAACAAGTTACCAAGAGGGAAACTAGTGAAAAGTGGAATAATTGGAAATGGAGGAGTTTTCGGGATGAATTCTTGAATGGTGCTTATTTTGTGCCATCTGGGTATGGAAGTTGCACCCCAATATATTCACCTGCTCAGACTTTTATTGCGGCCGAGGCATCCATGGTGCCCTTATTAACTCTCAATGCAGGGCCACTGAATTGTGTTGTTGACAAAGCTTGTTAA 1191 0.4576 MATLTTLLVLSCFLVPTLASAPNRDSTKEFNALSPISSYIPKSPENVVMNTIDSCWRAKTDWASNRQSLADCAIGFGKDAIGGKFGDIYEVTDPSDDPVNPKPGTLRYGAIQTQPLWITFANDMVITLKNELMVNSYKTIDGRGANVEIANGPCITIQGVGHVIMHGISIHDCKPGQAAMVRSTPEHVGYREGSDGDAISIFASSNVWIDHCFLARCTDGLIDVIHASTAVTISNNYFTQHDKVILLGHSDEYSADRIMRVTVAFNRFGSGLVERMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTIFSEGNYFMASNDSAAKQVTKRETSEKWNNWKWRSFRDEFLNGAYFVPSGYGSCTPIYSPAQTFIAAEASMVPLLTLNAGPLNCVVDKAC 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0910 396 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Ssu1g0910 396 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Ssu1g0910 396 PRINTS Pollen allergen Amb family signature 337 361 IPR018082 -
Ssu1g0910 396 PRINTS Pollen allergen Amb family signature 195 216 IPR018082 -
Ssu1g0910 396 PRINTS Pollen allergen Amb family signature 367 390 IPR018082 -
Ssu1g0910 396 PRINTS Pollen allergen Amb family signature 275 294 IPR018082 -
Ssu1g0910 396 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Ssu1g0910 396 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Ssu1g0910 396 Gene3D - 49 389 IPR012334 -
Ssu1g0910 396 PANTHER PECTATE LYASE 17 395 - -
Ssu1g0910 396 PANTHER PECTATE LYASE 18-RELATED 17 395 IPR045032 GO:0030570
Ssu1g0910 396 Pfam Pectate lyase 129 314 IPR002022 -
Ssu1g0910 396 SUPERFAMILY Pectin lyase-like 49 387 IPR011050 -
Ssu1g0910 396 SMART amb_all 123 320 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0910 Ssu-Chr1 20159700 20162217 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0910 6 396 Polysaccharide Lyase AT4G22080 65.903 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0910 K01728 - gmx:100803229 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0160 6 2560163 2562051 Ssu1g0910 1 20159700 20162217 PCT