Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0909 ATGGCCACCTCTCCCTCACTCCTCTTGCTTTCATGCATCACACTACACCTTGCCTATTGCCGTATCAATGCCTATTCAACAGAAAGTGTAGTCCTAAACAAGATAGACTCTTGCTGGCGGGCCAAAACAAATTGGGCATCAAACCGCCAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCATTGGAGGCAAATACGGATCAATATATAAAGTCACCGATCCCTCTGATGACCCCGTAAGCCCCAAACCAGGCACACTTCGTTATGGTGTAATCCAAACACAGCCCCTTTGGATCATTTTTGCCAAAGATATGGTAATTAGGCTCAAGAATGAGCTCATCATGAATAGCTACAAGACCATTGATGGAAGAGGTGCTAAAGTGGAGATAGGAAACGGGCCTTGCATTACGATACAAGGTGTTAGCCATGTTATCATACATGGCATTAGCATCCATGATTGTAAACCAAGCAAGGCTGGCCTTGTAAGAAGTACCCCATCTCATGTTGGCCATCGTCAAGGCTCTGATGGGGATGGCATTAATATATTTGCCTCCTCAAATGTTTGGATTGATCATTGCTTTTTGGCTCGTTGTGCTGATGGCTTGATTGACGTTATTCATGCCTCAACTGCCATTACCATTTCTAACAATTACTTTACCCAGCACGACAAAGTAATGCTACTTGGACACAGCGACGAATACACAGCAGATAAAATAATGAAGGTAACAATAGCCTTCAACCGATTTGCTAGTGGCCTAATTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTAGTGAACAATAAATATGATGGGTGGAAGATGTATGCCATAGGTGGCAGTTCTAACCCAACCATTTTAAGTGAAGGAAACTACTACATAGCTCCGAATAACCCTGCTACAAAACAGGTTACCAAGAGGGAAATGAAGGGAAAATTGAAGAATTGGAAATGGAGGTCTTCTAAGGATGCATTCCTAAATGGTGCTTATTTTGTTCCATCTGGGTATGGAAGTTGTGCCCCAAATTATTCGCCTACTCAATTTTTTACTGCTGCACCTGCTTCCCTGGTGCCCGCAATAACTCTCAATGCGGGTCCCCTGCTGAGTTGTGTTGTTGGTAAAGCATGTTAG 1143 0.4366 MATSPSLLLLSCITLHLAYCRINAYSTESVVLNKIDSCWRAKTNWASNRQALADCAIGFGKDAIGGKYGSIYKVTDPSDDPVSPKPGTLRYGVIQTQPLWIIFAKDMVIRLKNELIMNSYKTIDGRGAKVEIGNGPCITIQGVSHVIIHGISIHDCKPSKAGLVRSTPSHVGHRQGSDGDGINIFASSNVWIDHCFLARCADGLIDVIHASTAITISNNYFTQHDKVMLLGHSDEYTADKIMKVTIAFNRFASGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSSNPTILSEGNYYIAPNNPATKQVTKREMKGKLKNWKWRSSKDAFLNGAYFVPSGYGSCAPNYSPTQFFTAAPASLVPAITLNAGPLLSCVVGKAC 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0909 380 SUPERFAMILY Pectin lyase-like 33 370 IPR011050 -
Ssu1g0909 380 SMART amb_all 106 303 IPR002022 -
Ssu1g0909 380 Gene3D - 32 372 IPR012334 -
Ssu1g0909 380 PANTHER PECTATE LYASE 1 379 - -
Ssu1g0909 380 Pfam Pectate lyase 113 297 IPR002022 -
Ssu1g0909 380 PANTHER PECTATE LYASE 18-RELATED 1 379 IPR045032 GO:0030570
Ssu1g0909 380 PRINTS Pollen allergen Amb family signature 320 344 IPR018082 -
Ssu1g0909 380 PRINTS Pollen allergen Amb family signature 350 373 IPR018082 -
Ssu1g0909 380 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Ssu1g0909 380 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
Ssu1g0909 380 PRINTS Pollen allergen Amb family signature 78 103 IPR018082 -
Ssu1g0909 380 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Ssu1g0909 380 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
Ssu1g0909 380 PRINTS Pollen allergen Amb family signature 178 199 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0909 Ssu-Chr1 20147607 20149063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0909 23 380 Polysaccharide Lyase AT1G11920 69.916 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0909 K01728 - gmx:100799106 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0909 1 20147607 20149063 Ssu1g0909 1 20147607 20149063 ECH