Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0907 ATGGACAAAGGATGGGGACTCACCCCTGATACCTCTTCCTCCCAATCCCTTCCGTTATTTCCTTCCAAACAGCCTCCCACATCCGTGAACGCTTTCTCCAAACTCACCAACGACAGGATGTTCCCTCTTCTCGGATTCCCCGTTAACCTCAGCCGCGCCGCCAACAAGGAAGACGATGACAACCGCAAAGTGGTCGGTGAAGTCGACTTCTTCTCTGATAGAAACAAACCAACACCTCCACCCTCCCACGACCAAAAAGTTAAACCCAACATCATCAAGAAGGAGATTGATGAAACAACTCTCCACGTTAATACTGGTTTACAACTCCTTACGGCTAACACCGGGAGTGACCAATCTACCGTCGATGATGGGGTCTCATCGGACGCGGAAGATAAGCGAGCCAAGACCACTGAgCTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCAGAGAACAAGAAGCTGAAAGAGATGCTCAGCCATGTGACTGGAAACTACACGGCCTTGCAGATGCATCTCATGACAATAATGCAACAGAACCAGCGCACAGAGAGCACGGAAAATGAgGTTGTTCAGGGAAAGGTCGAGGATAAAAACCATGGTGTTGGTGGAGGGAAGGTACCGAGACAGTTCCTCGATATAGGTCCCAGTGGCACAGCCGAAGTAGATGATCAAGTGTCCGGTTCTTCCGAGGAAAGAACACGATCGAGCACACCACAGAACAACAACGCCGAAGTTGGAACAAGAGGTGGCGTGAGAAATAATAATGGTAAAAACGAGTTGGGTAGGGAGGAGAGTCCAGACTCAGAATCACAAGGTTGGGGTCCCAATAAGCTTCAGAAAGTGAACCCTTCCATTGCTATGGATCAATCCACTACAGAAGCCACGATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCAGAAGCTCCCATGATCAGTGACGGGTGCCAATGGCGAAAATATGGGCAAAAAATGGCCAAGGGAAACCCATGTCCTCGAGCATATTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCTGAGGATAGAACAATTTTGGTGACAACATATGAAGGCACACATAACCATCCACTGCCACCTGCTGCTATGGCCATGGCATCAACCACTGCAGCTGCTGCTAGCATGTTGCTTTCAGGGTCAATGTCCAGTGCAGATGGAATAATGAACCCCAATTTGCTAGCCAGAGCAATTCTCCCTTGCTCTTCAAGCGTGGCAACACTTTCAGCATCAGCACCCTTCCCCACTGTGACTTTGGACCTCACACATCACTCAAACCCATTGCAATTTCAAAGACCTGCTGCCCCATTCCAACTACCCTTCCTCCAAGGGCAGCCTCAGAACTTTGGGTCCGGAGCCACCCCGATTGCACAAGCACAAGCACAAGCACTTTATAACCAATCCAAATTCTCTGGTCTTCAGTTATCTCAGGATGTAGGATCTTCCCAGTTGGCCCCTCAAGCTCCTAGACCCCCCTTACAGCCAAGCCAACAACCCTCACTGGCTGACACAGTCAGCGCCGCCACCGCAGCCATCACCGCCGACCCGAACTTCACCGCCGTGCTCGCCGCCGCCATCTCCTCCATCATCGGCGGTGGTCATGCAAACACCACcaccaataacaacaacacgAGCAGGACTACCATTAGCAGCTTTTCAGGAAATTAA 1713 0.5009 MDKGWGLTPDTSSSQSLPLFPSKQPPTSVNAFSKLTNDRMFPLLGFPVNLSRAANKEDDDNRKVVGEVDFFSDRNKPTPPPSHDQKVKPNIIKKEIDETTLHVNTGLQLLTANTGSDQSTVDDGVSSDAEDKRAKTTELAQLQVELQRMNAENKKLKEMLSHVTGNYTALQMHLMTIMQQNQRTESTENEVVQGKVEDKNHGVGGGKVPRQFLDIGPSGTAEVDDQVSGSSEERTRSSTPQNNNAEVGTRGGVRNNNGKNELGREESPDSESQGWGPNKLQKVNPSIAMDQSTTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTAAAASMLLSGSMSSADGIMNPNLLARAILPCSSSVATLSASAPFPTVTLDLTHHSNPLQFQRPAAPFQLPFLQGQPQNFGSGATPIAQAQAQALYNQSKFSGLQLSQDVGSSQLAPQAPRPPLQPSQQPSLADTVSAATAAITADPNFTAVLAAAISSIIGGGHANTTTNNNNTSRTTISSFSGN 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0907 570 Coils Coil 132 166 - -
Ssu1g0907 570 Pfam WRKY DNA -binding domain 316 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g0907 570 MobiDBLite consensus disorder prediction 190 204 - -
Ssu1g0907 570 MobiDBLite consensus disorder prediction 494 515 - -
Ssu1g0907 570 MobiDBLite consensus disorder prediction 7 27 - -
Ssu1g0907 570 MobiDBLite consensus disorder prediction 271 298 - -
Ssu1g0907 570 SMART WRKY_cls 314 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g0907 570 MobiDBLite consensus disorder prediction 114 134 - -
Ssu1g0907 570 Gene3D WRKY domain 299 376 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g0907 570 MobiDBLite consensus disorder prediction 180 298 - -
Ssu1g0907 570 MobiDBLite consensus disorder prediction 232 256 - -
Ssu1g0907 570 SUPERFAMILY WRKY DNA-binding domain 307 375 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g0907 570 ProSiteProfiles WRKY domain profile. 309 375 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g0907 570 PANTHER WRKY TRANSCRIPTION FACTOR 6 40 558 - -
Ssu1g0907 570 MobiDBLite consensus disorder prediction 547 570 - -
Ssu1g0907 570 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 40 558 IPR044810 GO:0003700
Ssu1g0907 570 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0907 Ssu-Chr1 20114792 20117100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0907 1 558 WRKY Transcription Factor Family AT1G62300 50.649 2.20e-158 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g0907 WRKY 6.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0907 - - pvu:PHAVU_006G147800g 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0907 1 20114792 20117100 Ssu1g0907 1 20114792 20117100 ECH
Ssu3g2269 3 72792403 72795435 Ssu1g0907 1 20114792 20117100 ECH
Ssu8g0770 8 12576386 12577550 Ssu1g0907 1 20114792 20117100 ECH