Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0900 ATGAAGGCTGAAGCTGAGAGTGAGAGTTCTCTCAAAGGGTCCTCAGTTTCAACCAtgtcctcttcttcctcttctcttatTACCAGTGTTGTTGATAACAACCCTTCACACCCCTCTGAGTTAAGAGCTACACGCCATCGTTTTGGTTCTCACCAGCTTCCTGAGATAAGCCTGAAAACACCTATGGTCAGGCCTTATGTTCGATCAAAAATGCCTAGGCTTCGTTGGACACCAGATCTCCATCGTTGCTTCGTGCATGCAGTTCAAAGACTTGGAGGAGAAGACAGGGCCACACCAAAGTTGGTTTTACAGCTCATGAATGTAAAGGGGCTTACTATATCTCATGTCAAAAGCCACCTTCAGATGTACAGGAGCATGAGGCACGAGCAGATGAGTCAAGgtGCAAAGAAGAATGATATGGCACCAGATTTCCTAGCTTCCACATTCTCAACTCTTGCCCCAAGGTACGGCCAACAGAATCCTCACCAAAGAAGCAGCACGGAAGAGCTTGTTCCCACACAAGCTCAATgTAATGAGCGAGAGTCTTCTTACAATGGAAAAGGGAGTGAATCGATTATAATTTGTAACGGTGATGAACAGAAGATGCACTCCTACATCATCTTCGAGGGTCTTCTGAGAGGCCAGACTGTCCAAGAGAATAAAATTCTTCCTGAAAAGGTGTCACTAGGGGATGCCGGTTACGACAGCGACCATCAAAGATTCCAAGACAGAACTGCCATAGGAGAGAGAGTGGCTGAAGACACATCCCTGTCAATGAACTCGAGGGCTTCATATCCATTCTTGAATCGGAGCGATTTAACTGGTCCAGATGCTAATGATGTCTCTCTTGAGCTCACGCTCTCTTAG 867 0.4487 MKAEAESESSLKGSSVSTMSSSSSSLITSVVDNNPSHPSELRATRHRFGSHQLPEISLKTPMVRPYVRSKMPRLRWTPDLHRCFVHAVQRLGGEDRATPKLVLQLMNVKGLTISHVKSHLQMYRSMRHEQMSQGAKKNDMAPDFLASTFSTLAPRYGQQNPHQRSSTEELVPTQAQCNERESSYNGKGSESIIICNGDEQKMHSYIIFEGLLRGQTVQENKILPEKVSLGDAGYDSDHQRFQDRTAIGERVAEDTSLSMNSRASYPFLNRSDLTGPDANDVSLELTLS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0900 288 MobiDBLite consensus disorder prediction 1 53 - -
Ssu1g0900 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 128 IPR017930 -
Ssu1g0900 288 Gene3D - 71 129 - -
Ssu1g0900 288 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 12 219 - -
Ssu1g0900 288 Pfam Myb-like DNA-binding domain 74 124 IPR001005 -
Ssu1g0900 288 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 12 219 IPR044848 GO:0003700
Ssu1g0900 288 SUPERFAMILY Homeodomain-like 70 126 IPR009057 -
Ssu1g0900 288 MobiDBLite consensus disorder prediction 8 38 - -
Ssu1g0900 288 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 72 125 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0900 Ssu-Chr1 19985394 19988527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0900 63 224 G2-like Transcription Factor Family AT2G42660 42.197 6.26e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu1g0900 Myb_DNA-binding 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0900 - - gmx:100798980 394.43