Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0897 ATGGCTGACGCTACACAATCTAATGCTGACTTGTTGGAGTGGCCAAAGAAAGATAAGCGCCGCTTCCTGCATGTTGTGTACCGTGTTGGTGATCTTGATCGCACCATTAAGTTCTATACTGAATGTTTCGGGATGAAGCTTTTGAGGAAAAGAGATATTCCAGAAGAGAAATACGCCAATGCTTTTCTTGGATTTGGCCCTGAACAatcccattttgttgtggaATTAACTTATAATTATGGAGTGACCTCATATGATATTGGAACTGGCTTTGGACATTTTGCTATTGCAACTCCAGATGTTTACAAATTAGGTTGA 318 0.3805 MADATQSNADLLEWPKKDKRRFLHVVYRVGDLDRTIKFYTECFGMKLLRKRDIPEEKYANAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATPDVYKLG 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0897 105 ProSitePatterns Glyoxalase I signature 2. 88 100 IPR018146 GO:0004462|GO:0046872
Ssu1g0897 105 Gene3D - 1 104 IPR029068 -
Ssu1g0897 105 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 21 105 IPR037523 -
Ssu1g0897 105 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 22 103 IPR004360 -
Ssu1g0897 105 PANTHER LACTOYLGLUTATHIONE LYASE-LIKE PROTEIN 11 104 - -
Ssu1g0897 105 ProSitePatterns Glyoxalase I signature 1. 24 45 IPR018146 GO:0004462|GO:0046872
Ssu1g0897 105 PANTHER LACTOYLGLUTATHIONE LYASE 11 104 - -
Ssu1g0897 105 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 20 103 IPR029068 -
Ssu1g0897 105 TIGRFAM glyox_I: lactoylglutathione lyase 7 103 IPR004361 GO:0004462|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0897 Ssu-Chr1 19854792 19855446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0897 24 103 Calmodulin-binding Proteins AT1G08110 27.619 1.53e-06 43.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0897 1 19854792 19855446 Ssu1g0897 1 19854792 19855446 ECH
Ssu6g0173 6 2771361 2774375 Ssu1g0897 1 19854792 19855446 PCT