Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0886 ATGAGCGACTCAAATCACGCAATCACGGGCAACAGTGGTCGAGAGATGAAACATGAGGCTCCTATGCGGGAATTCTCCGCTCAGGAGGAGGATCTCATTGCTAGAATGTTTCGTTTGGTCGGAAACAGGTGGTCTCTGATTGCTGGGAGAATTCCCGAAAGGACTGCAAAAGAGATTGAAGAGTATTGGACTTCAAAGTGCTTATCAACGAGTGATtcatgttcttcttcttctgtcaTATTAAGTTCCTAA 252 0.4167 MSDSNHAITGNSGREMKHEAPMREFSAQEEDLIARMFRLVGNRWSLIAGRIPERTAKEIEEYWTSKCLSTSDSCSSSSVILSS 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0886 83 CDD SANT 24 63 IPR001005 -
Ssu1g0886 83 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 72 IPR017930 -
Ssu1g0886 83 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 14 72 - -
Ssu1g0886 83 PANTHER AND CPC, PUTATIVE-RELATED 14 72 - -
Ssu1g0886 83 SMART sant 21 69 IPR001005 -
Ssu1g0886 83 Gene3D - 24 67 - -
Ssu1g0886 83 MobiDBLite consensus disorder prediction 1 23 - -
Ssu1g0886 83 Pfam Myb-like DNA-binding domain 24 64 IPR001005 -
Ssu1g0886 83 ProSiteProfiles Myb-like domain profile. 17 67 IPR001005 -
Ssu1g0886 83 SUPERFAMILY Homeodomain-like 24 65 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0886 Ssu-Chr1 19631968 19633070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0886 25 78 MYB Transcription Factor Family AT5G14750 49.123 1.87e-14 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu1g0886 Myb_DNA-binding 1.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0886 - - adu:107482590 80.4925