Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0874 ATGATGCAGCCAGGACCCGGCATGGCTCCTCCCAGCATGGGGCAACAGCCGCCGCAACAGTACCAGCAGCAGCCACCGCAGCAGCAGCCCTACGTCATGATGCCGCCGCAGCCTCAGGCGCCGCCGCCTATGTGGGCCCCCTCCGCCCAGGCGCCGGCGCCGCAGCAGCCTGCCAGTGCCGACGAGGTCCGAACCCTCTGGATCGGCGACTTGCAGTACTGGATGGACGAGAACTATCTCTACACGTGCTTTGCTCATACTGGCGAGGTTACATCTGTCAAAGTGATTCGAAATAAGCAAACTAGTCAATCAGAAGGTTATGGgtttattgagtttaatagtcgTGCAGGAGCTGAGAGAATTCTTCAAACGTATAATGGGGCTATTATGCCAAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCCACTTTTAGTGCTGGCGAGAGACGCCATGACGATTCTCCGGATTACACCGTATTTGTTGGTGACTTGGCTGCAGATGTTACTGATTACCTCCTTCAAGAGACATTTAGGGCTCGTTATAACTCGGTGAAGGGTGCAAAAGTTGTTATTGATAGGCTAACTGGCCGGACCAAGGGGTACGGCTTTGTAAGGTTCGGAGATGAGAGCGAGCAAGTGAGGGTGATGACTGAGATGCAAGGGGTTCTTTGCTCCTCAAGACCCATGAGGATTGGACCAGCCACTAATAAAACCCCTGCCACTCAACCAAAAGgttcatctttttcttcatgcaatttattctttttgctGCAAATATCTCTTTCGTATGCTATTTTTGTTGGCAATTTGGATCCTAATGTCACTGATGATCATCTGAGGCAAGTTTTCAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTGTGCCGAAGAGGCACTTCGGATGTTGAATGGGACGCTATTAGGTGGACAAAACGTCCGTCTTTCATGGGGCCGCAGTCCTTCAAACAAACAGGCTCAGCCAGATCCAAACCAGTGGAATGGTGCTGCTGGATATTATGGATATGCTCAGGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAGGATCCCAACATGTATGGCAGTTATCCGGGGTATCCTAGTTACCAACCACCTCAGCAAGCAGCAAATAGGATATAG 1188 0.4874 MMQPGPGMAPPSMGQQPPQQYQQQPPQQQPYVMMPPQPQAPPPMWAPSAQAPAPQQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTYNGAIMPNGGQSFRLNWATFSAGERRHDDSPDYTVFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRVMTEMQGVLCSSRPMRIGPATNKTPATQPKGSSFSSCNLFFLLQISLSYAIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQAQPDPNQWNGAAGYYGYAQGYENYGYAPAGQDPNMYGSYPGYPSYQPPQQAANRI 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0874 395 SUPERFAMILY RNA-binding domain, RBD 263 360 IPR035979 GO:0003676
Ssu1g0874 395 CDD RRM2_SECp43_like 156 235 - -
Ssu1g0874 395 Gene3D - 148 246 IPR012677 -
Ssu1g0874 395 Gene3D - 9 147 IPR012677 -
Ssu1g0874 395 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 17 390 - -
Ssu1g0874 395 SUPERFAMILY RNA-binding domain, RBD 27 145 IPR035979 GO:0003676
Ssu1g0874 395 SUPERFAMILY RNA-binding domain, RBD 146 248 IPR035979 GO:0003676
Ssu1g0874 395 SMART rrm1_1 65 140 IPR000504 GO:0003723
Ssu1g0874 395 SMART rrm1_1 158 232 IPR000504 GO:0003723
Ssu1g0874 395 SMART rrm1_1 264 331 IPR000504 GO:0003723
Ssu1g0874 395 Gene3D - 260 344 IPR012677 -
Ssu1g0874 395 CDD RRM1_SECp43_like 65 145 - -
Ssu1g0874 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 226 IPR000504 GO:0003723
Ssu1g0874 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 328 IPR000504 GO:0003723
Ssu1g0874 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 131 IPR000504 GO:0003723
Ssu1g0874 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 335 IPR000504 GO:0003723
Ssu1g0874 395 CDD RRM3_NGR1_NAM8_like 265 333 - -
Ssu1g0874 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 236 IPR000504 GO:0003723
Ssu1g0874 395 MobiDBLite consensus disorder prediction 1 58 - -
Ssu1g0874 395 MobiDBLite consensus disorder prediction 29 50 - -
Ssu1g0874 395 MobiDBLite consensus disorder prediction 14 28 - -
Ssu1g0874 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 144 IPR000504 GO:0003723
Ssu1g0874 395 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 17 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0874 Ssu-Chr1 19291667 19295561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0874 158 328 Eukaryotic Initiation Factors Gene Family AT4G34110 28.409 4.56e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0874 - - aprc:113864230 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0191 6 3061206 3064901 Ssu1g0874 1 19291667 19295561 PCT