Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0868 ATGAGATGCTTGCCATGCTGCAACTGCAAGTCAAATGCTGAATCACCATCTTCCAGAGCATGCCCCCGCCAAATTTCCAAAGGGAGGAGAACATTCAAATCATTAGCTGCAGCTGTGTCACTTAAAACAGGTAGCAGCAGGCATAGACAAATAGATGCAGAGATAAGAAAATATGGATCTGCAAAAAACGATGTCAAAATATTCACATATGAACAACTTGCTGAAGCAACAAACAACTACAATCCTGATTGCCTGGTGGGCGAAGGTGGATTCGGGAATGTTTACAAAGGATACTTAAAAAGTGTTGAACAAACTGTAGCTGTGAAGGTACTGAACAGGGAAGGAGCCCAAGGAACACGAGAATTTTTCGCAGAAATTTTGATGTTAAGCATGGTGCAACACCCAAACCTTGTGAGGCTCATTGGTTATTGTGCAGAAGGCGCTCACAGgattttagtttatgaataCATGGCCAATGGGAGTTTGGAAAATCACCTTCTAGACATAGGTGCAGATAAGGAGCCTTTGGATTGGAAGACTAGGATGAAAATAGCTGAGGGAGCAGCTAGAGGACTTGAATATTTGCATAACAGTGCAGATCCACCAGTGATATACCGTGATTTCAAATCATCTAATATACttttagatgaaaattttaatgcaaAGCTATCTGATTTTGGACTTGCTAAGATTAGTCCAAAAGAAGGCCAGGACCATGTGTCAACCAGGGTGATGGGGACTTTTGGCTACTGTGCACCAGAGTATGCTGCTACGGGTCAGCTAAGCTCAAAGGCAGACATTTATAGTTTTGGGGTAGTGTTTTTGGAAATAATCACGGGTAGGAGAGTATTTGACACTGCAAGAGTCGCAGAAGAGCAAAACTTGATTGACTGGGCACAACCTTTGTTTAAGGACAGAACAAAGTTCAATCTAATGGCTGACCCTTTGCTTAAAGGTCAGTTCCCTGTGAAGGGTCTATTTCAGGCTCTTGCAGTGGCAGCAATGTGTCTCCAAGAGGAAGCTGACACACGACCTTACATGGATGATGTTGTGACGGCTCTTGCGCATCTAGCAGTGCACAAAGTTGGAGAAAAGGACATAGCTGGTGAATCTATAAAATGTGCCGGGCATGTTGAATCTTTTAGAGCTGCAAGTTCAGCTGGATCTGAAAGGGCGTAA 1179 0.4241 MRCLPCCNCKSNAESPSSRACPRQISKGRRTFKSLAAAVSLKTGSSRHRQIDAEIRKYGSAKNDVKIFTYEQLAEATNNYNPDCLVGEGGFGNVYKGYLKSVEQTVAVKVLNREGAQGTREFFAEILMLSMVQHPNLVRLIGYCAEGAHRILVYEYMANGSLENHLLDIGADKEPLDWKTRMKIAEGAARGLEYLHNSADPPVIYRDFKSSNILLDENFNAKLSDFGLAKISPKEGQDHVSTRVMGTFGYCAPEYAATGQLSSKADIYSFGVVFLEIITGRRVFDTARVAEEQNLIDWAQPLFKDRTKFNLMADPLLKGQFPVKGLFQALAVAAMCLQEEADTRPYMDDVVTALAHLAVHKVGEKDIAGESIKCAGHVESFRAASSAGSERA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0868 392 SUPERFAMILY Protein kinase-like (PK-like) 64 352 IPR011009 -
Ssu1g0868 392 PANTHER OS07G0668900 PROTEIN 1 390 - -
Ssu1g0868 392 ProSiteProfiles Protein kinase domain profile. 80 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0868 392 Gene3D Phosphorylase Kinase; domain 1 40 156 - -
Ssu1g0868 392 Pfam Protein kinase domain 85 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0868 392 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Ssu1g0868 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Ssu1g0868 392 Gene3D Transferase(Phosphotransferase) domain 1 157 373 - -
Ssu1g0868 392 CDD STKc_IRAK 86 354 - -
Ssu1g0868 392 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0868 Ssu-Chr1 19241383 19243528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0868 66 363 Glycoside Hydrolase AT3G07070 62.752 1.31e-139 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu1g0868 Pkinase 7.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0868 - - gmx:100305361 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0868 1 19241383 19243528 Ssu1g0868 1 19241383 19243528 ECH