Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0862 ATGATCTCTTCAATGAAGTACACAGCCTCATCTCTCACCTGTTCTGCTTTCTCAAGCAGAAAGTTTCCCGTTCCAAGGCCTCAACTTCTCACATTACCCACCATTCAGAACGTTGAACAAAACACGGGTCCTTCTGAGTTGTGTTCTCGGAAGCCCCTGTACCTTTCATCCACTGAGAACTTGGCATTGGTGAGAAGGAGGGTGAGGGAGTGCCAGGCCTATGAAGCTGACAGGTCACGGCCACTGGAGATCAACATTGAGCTGCCGGGTGAAGAGGCAGCTCAGAGGGTCAAGATTGGGGTGTATTTTGCCATCTGGTGGGCTTTGAATGTGGTCTTCAACATTTACAACAAGAAGGTTTTGAATGCTTTTCCTTACCCCTGGCTCACCTCCACTTTGTCCCTTGCGGCTGGTTCCCTCATGATGTTAATCTCCTGGGCCACCAAGGTTGCTGAGGTCCCAAAAGTTGACTTGGACTTCTGGAAGGCCTTGTTTCCGGTTGCGGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCAAAGTTGCTGTTTCATTCACTCACATCATCAAGAGTGGAGAGCCAGCTTTCAGTGTCCTGGTGTCAAGGTTCTTACTTGGAGAAGCATTCCCAATGCCGGTTTATCTGTCGCTAGTGCCAATTATTGGTGGTTGCGCACTAGCTGCTGTGACTGAGCTCAATTTCAATATGATTGGCTTTATGGGGGCTATGATATCCAATTTGGCATTTGTCTTCCGGAATATATTCTCAAAGAAGGGGATGAAGGGGATGTCTGTTAGTGGAATGAACTACTATGCTTGTCTTTCCATGATGTCTCTATTGATTCTCACACCCTTTGCCATTGCTGTGGAGGGCCCCAAGGTTTGGGCTGCAGGCTGGCAAACAGCTGTGTCTCAGATTGGTCCCAATTTTGTATGGTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCTTACATGTCTCTTGATCAGATTTCTCCCTTAACATTTAGCATTGGGAACACAATGAAGAGGATTTCGGTCATTGTCTCTTCGATCCTTATCTTTCACACGCCTGTTCAGCCCATCAATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTATATTCACAGGCTAAACAGTAA 1173 0.4749 MISSMKYTASSLTCSAFSSRKFPVPRPQLLTLPTIQNVEQNTGPSELCSRKPLYLSSTENLALVRRRVRECQAYEADRSRPLEINIELPGEEAAQRVKIGVYFAIWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLMMLISWATKVAEVPKVDLDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPMPVYLSLVPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGMSVSGMNYYACLSMMSLLILTPFAIAVEGPKVWAAGWQTAVSQIGPNFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSILIFHTPVQPINALGAAIAILGTFLYSQAKQ 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0862 390 Pfam Triose-phosphate Transporter family 98 386 IPR004853 -
Ssu1g0862 390 PANTHER SOLUTE CARRIER FAMILY 35 32 390 - -
Ssu1g0862 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 137 233 - -
Ssu1g0862 390 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC-LIKE 32 390 - -
Ssu1g0862 390 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 98 389 IPR004696 GO:0016021|GO:0022857|GO:0055085
Ssu1g0862 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 289 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0862 Ssu-Chr1 19116748 19119442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0862 35 390 Antiporters AT1G61800 80.392 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0862 K15283 K05350 gmx:100804205 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0862 1 19116748 19119442 Ssu1g0862 1 19116748 19119442 ECH
Ssu6g0202 6 3184853 3187518 Ssu1g0862 1 19116748 19119442 PCT