Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0860 ATGGCAAATTTCAcctccttctcttcttcttcttcgatTCTGTCACACATTCCACCCATTTCAGCTCCATCTTCTTCTGCACCTTTCGACGACTCTTCTGAAGACTCCTGCAGTATATGCCTAGAGCCCTTCACCATTCATGACCCATCCACTGTTACCTGTTGCAAACATGAATATCATCTGCATTGCATTCTTGAATGgTCACAAAGAAGCAAAGAGTGCCCAATATGTTGGCAATCACTTGCTTTGAAAGACCCTGCGAGCCAAGAGCTTCTAGCTGCAGTGGAAGAAGAAAAACGCATGAGATCAAGAAACATGAGTAATTCTCGTGTCCCCCTTCAACAGCTTAATGATGGCCATGATGATTCTTGCTCAGATGACTCTGATTGTGATGACCAAATTATGAGGCACCTAGTTGCCACCGCAAGTAGAGCTCGTTTTGTTCAGAGACAGGAAAGGGAGAGATCACCTGGTGCTGGTCCATCAGAGGTTCTTGGTTCCAACTCTTCCATGGATGTATCTGAGGCACAACCAACACTTAGTACTTCACCATCAGCATTAAATAGGACTCCTGAGAGTGCAAGGAGACCAAACACTTCTGAGATGTTTTCCTTCCCCGAGTCCTTCAAATCCAAATTTTCTGCTGCTTCAGCCAGATATAAGGAATCAATTTCTAAAGGTACCCGTGGCCTTAAAGAGAAGTTACTTGCTCATAATGTCTCGGTGAAAGAGCTGAGTAAAGGTGTTCAGCGCGAGATGAATGCAGGTATCGCTGGAGTTGCACGGATGATTGAACGCCTTGATCTTAGCTCAAAACGGTCCAGTTCTCCTCTTCTTTCGGTCCATAGTGATGGAACTTTAGGCTTCCCTGAAGAAGGGAAGTCTGTTGAAGAGAATGGCATTGGATTTTCTCCTAGTAAAGAGAGTGGGGGTGCTGTTCATGATGTTAGTTCAGATGTTCCTCCACTTGTTACTAACATGCAATCTTTTCGAGGGAAAATTCCTCCATGTGTTCAGAAATTGGGTGACAGTTACATTTTGGCAATAGTACACATGATATGCTATGAAGACTTTCGGGGCCATCGACTTTACTGTGCTGTCTCAATTGTCCAAGAAGTGCAAGAGACGCCTCAGATAACCAATGAACCCGTTGGTATGCGTCCTGCATTGTTAACAAATGGTCAATAA 1188 0.4335 MANFTSFSSSSSILSHIPPISAPSSSAPFDDSSEDSCSICLEPFTIHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEEEKRMRSRNMSNSRVPLQQLNDGHDDSCSDDSDCDDQIMRHLVATASRARFVQRQERERSPGAGPSEVLGSNSSMDVSEAQPTLSTSPSALNRTPESARRPNTSEMFSFPESFKSKFSAASARYKESISKGTRGLKEKLLAHNVSVKELSKGVQREMNAGIAGVARMIERLDLSSKRSSSPLLSVHSDGTLGFPEEGKSVEENGIGFSPSKESGGAVHDVSSDVPPLVTNMQSFRGKIPPCVQKLGDSYILAIVHMICYEDFRGHRLYCAVSIVQEVQETPQITNEPVGMRPALLTNGQ 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0860 395 MobiDBLite consensus disorder prediction 145 202 - -
Ssu1g0860 395 MobiDBLite consensus disorder prediction 102 128 - -
Ssu1g0860 395 ProSiteProfiles Zinc finger RING-type profile. 37 77 IPR001841 -
Ssu1g0860 395 SUPERFAMILY RING/U-box 29 84 - -
Ssu1g0860 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 110 IPR013083 -
Ssu1g0860 395 MobiDBLite consensus disorder prediction 297 316 - -
Ssu1g0860 395 MobiDBLite consensus disorder prediction 162 202 - -
Ssu1g0860 395 SMART ring_2 37 77 IPR001841 -
Ssu1g0860 395 Pfam Ring finger domain 35 77 IPR001841 -
Ssu1g0860 395 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 325 - -
Ssu1g0860 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0860 Ssu-Chr1 19076482 19079058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0860 31 85 C3H Transcription Factor Family AT4G00335 45.455 1.77e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0860 K19043 - gmx:100805449 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0860 1 19076482 19079058 Ssu1g0860 1 19076482 19079058 ECH