Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0845 ATGTCTCACATAGCTGTCGAGAGGAACAGGAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGGTCGTTGACCCCATGTTTCTATATCAAAAGGgGAGATCAAGCATCTATAATAGGGGGTGTTATAGAATTCATCAAGGAGTTACACCAAGTTCTTCAAGCTTTGGAGTCccagaaaagaagaaagagtttAAGCCCTAGCCGTGGCCCGAGTCCACGAACACTGCAGCCAGCGTTTCATCAACTTGATAGCTCCTCCATAATTGGGACTAATTCTTTCAAGGAACTAGGAGCAAGCTGCAACTCTTCTGTTGCTGATGTTGAAGTGAAAATTTCGGGTTCAAATGTGATCTTGAAAGTCATTTCCCACCGAATTCCGGGTCAAGTTGCAAAGATCATAACTGTTTTGGAAAGTCTTtcatttgaaattcttcatcTGAACATCAGCAGCATGGAGGAGACTGTCCTTTATCAATTTGTGGTCAAGATAGAGCTGGGATGTCAACTAAGTTTGGAGGAACTAGCAATGGAAGTGCAACAAAGCTTCTGCTCAGAGGCTATAACTGCGCTGTGA 576 0.4028 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSRGPSPRTLQPAFHQLDSSSIIGTNSFKELGASCNSSVADVEVKISGSNVILKVISHRIPGQVAKIITVLESLSFEILHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSEAITAL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0845 191 SMART finulus 4 55 IPR011598 GO:0046983
Ssu1g0845 191 PANTHER TRANSCRIPTION FACTOR MUTE 1 189 - -
Ssu1g0845 191 CDD bHLH_AtFAMA_like 1 73 - -
Ssu1g0845 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Ssu1g0845 191 PANTHER TRANSCRIPTION FACTOR FAMA 1 189 IPR044283 GO:0003700|GO:0010052
Ssu1g0845 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 66 IPR036638 GO:0046983
Ssu1g0845 191 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Ssu1g0845 191 Gene3D - 1 64 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0845 Ssu-Chr1 18772767 18774486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0845 1 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 65.829 5.19e-87 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g0845 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0845 - - gmx:100810771 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0845 1 18772767 18774486 Ssu1g0845 1 18772767 18774486 ECH