Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0843 ATGGGTATCTCGTGGAGTAGCAGAAGAAGAAACAATTACATCCAAAACCCACCACCACCCTCTTACTATTACCCCCAAGAATCTCACCCTCCTCCGCCACCCCCTCCGCCGCCACCGCCGCAAGGTTACTTTCTCCCTTCAACCACCCCTTACGCCCCGCACTGCACCAACTACGCCACTCGCCCTCCGttgccgccgccgccgccgcagACCCATTCGATTTCGTTCTATTACTCCAACCCCAACGGCTACGTCAATTCCACGGCGAATCGCCTTCACTTCCAGCCTTCCTACCAGCCTCAGCCCGGCGCGTGGCCCGCCACTCGTCCTTCTGCCTCTGCCTCTGCCTCCACTCCACCGCCCTACGTTGACCACCAAACCGCGAAGAAGATAAGGAACTATGTTAATGTCCATAAAGACACCCTGCGACTCGAGGTTGACGAGGACAACCCCGATCACCACCTGGTTTCCTTCGTTTTCGATGCTGTCTATGATGGCAGCATTACTATCTTCTACTTTgccaaggaagaagaaaaatgtagGTTTGTTCCATTATTTCCTGATGCATTTGAGCCAGTCAGAATCCCCTTTCAGAAAGGAGTGGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGGAGAAGATGTCTTTCCTCTTGTAATATGTGCCGAAACAAGTTTGAAAACTCCCTCAGCAGATGAAACTCCTGGTGATTCCTTGCTAGATGCATCCCCTCACATGCAAATAACTCAAAGTGTCTTAGAGAAAAGTAATGGCAGTGGTCCTTTCCTGATAAAAGTAATTAGGCAGATTTTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATAGGAAGCTCAGCAGCAGCTGATTTTGATGACAACGATCCTGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACTGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCAAAAGCTCTTCGACTTCAATCCAAGAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATAGAGATCAAGGTGAACAATGGCGATCAATGA 1128 0.4654 MGISWSSRRRNNYIQNPPPPSYYYPQESHPPPPPPPPPPPQGYFLPSTTPYAPHCTNYATRPPLPPPPPQTHSISFYYSNPNGYVNSTANRLHFQPSYQPQPGAWPATRPSASASASTPPPYVDHQTAKKIRNYVNVHKDTLRLEVDEDNPDHHLVSFVFDAVYDGSITIFYFAKEEEKCRFVPLFPDAFEPVRIPFQKGVGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLKTPSADETPGDSLLDASPHMQITQSVLEKSNGSGPFLIKVIRQILWIDGVRYELRELYGIGSSAAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSKKCPICRQSIEELIEIKVNNGDQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0843 375 SUPERFAMILY Formin homology 2 domain (FH2 domain) 30 40 - -
Ssu1g0843 375 SMART ring_2 320 358 IPR001841 -
Ssu1g0843 375 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 319 359 IPR045195 -
Ssu1g0843 375 PANTHER MAHOGUNIN 1 374 IPR045194 GO:0061630
Ssu1g0843 375 SUPERFAMILY RING/U-box 319 365 - -
Ssu1g0843 375 MobiDBLite consensus disorder prediction 1 75 - -
Ssu1g0843 375 ProSiteProfiles Zinc finger RING-type profile. 320 359 IPR001841 -
Ssu1g0843 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 374 - -
Ssu1g0843 375 Pfam Zinc finger, C3HC4 type (RING finger) 318 364 - -
Ssu1g0843 375 MobiDBLite consensus disorder prediction 18 46 - -
Ssu1g0843 375 MobiDBLite consensus disorder prediction 95 122 - -
Ssu1g0843 375 MobiDBLite consensus disorder prediction 1 17 - -
Ssu1g0843 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 369 IPR013083 -
Ssu1g0843 375 MobiDBLite consensus disorder prediction 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0843 Ssu-Chr1 18626724 18633764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0843 101 375 C3H Transcription Factor Family AT3G06140 60.498 3.33e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0843 - - vra:106775674 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0843 1 18626724 18633764 Ssu1g0843 1 18626724 18633764 ECH