Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0837 ATGAGCAGCTCGATATCAGCCTGTGCCTGTAAACAAGAGCTGCCCCTAGTAAGTTTCCAAAAGGGACTAACGATGGGGTCGTTTTTTCACCATCGGAATAAGGATAAGGTGGTAGTGATAATGGGAGCCACGGGGACCGGCAAGACGAAGTTGGCCATAGACGTGGCCAAACACTACCAACCAGCGGAGATAGTGAACTCGGACAAAATACAAGTGTACAAGGGCCTTGACATCACGACCAATAAGGTGAGCGAAGAAGAGTGTGGCGGGGTCCCACATCATCTGCTCGGCACTGTTGACCCTAACATAAATTTCAGTGCCAGTGACTTCTGTCGCCACGCCACTCTGGCCATCGATTCCATCGTGGAAAGGGACGGGTTACCCATCATTGCTGGAGGCTCCAACTCCTACCTCGACGCGTTGGTGAACCACCACAAGGAGTTTAGGTTAAGGTACGAGTGCTGTTTCCTCTGGGTCGACGTGTCCCCCCCCGTGCTCCATTCCTCCCTCCAGGCACGTGTGGACCGCATGATCGAGGCCGGTCAGGTTGACGAGGTTCGTGAGTTCTTCGACCCTCGTGCCGATTACTCGAAAGGGATTCGAAGGGCCATTGGGGTGCCCGAATTCGACGACTTTCTAACCGCAGAGGCCTCTGGGGCCGATGACAGAACCAAAAAGAGCCTCCTCGAGGCTGCCATTGCGAGGTTGAAGATCAACAACTGCACGCTCGCGAGCCGCCAGATTCAGAAGATTCACCGCTTGCACGGGTTGTGGAAACGGAGCATGCACCGTCTCGACGCCACCGAGGTCTTCCTCGGCTCGCGGGACGCGTGGCACGACCACGTCCTCGCCAAGAGTTTGATGATCCTCCACAAGTTTCTTTACGGGGAAAAGAAAACGCACGTCCCCACCGGAATCGTGTCGCCGAAAGATGTAATTGCGGCTGTTTCTGCGCCGCCCGTAGCGATGGCGGCAGCGACCCATTAG 987 0.5572 MSSSISACACKQELPLVSFQKGLTMGSFFHHRNKDKVVVIMGATGTGKTKLAIDVAKHYQPAEIVNSDKIQVYKGLDITTNKVSEEECGGVPHHLLGTVDPNINFSASDFCRHATLAIDSIVERDGLPIIAGGSNSYLDALVNHHKEFRLRYECCFLWVDVSPPVLHSSLQARVDRMIEAGQVDEVREFFDPRADYSKGIRRAIGVPEFDDFLTAEASGADDRTKKSLLEAAIARLKINNCTLASRQIQKIHRLHGLWKRSMHRLDATEVFLGSRDAWHDHVLAKSLMILHKFLYGEKKTHVPTGIVSPKDVIAAVSAPPVAMAAATH 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0837 328 Pfam IPP transferase 71 145 - -
Ssu1g0837 328 Pfam IPP transferase 148 249 - -
Ssu1g0837 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 262 - -
Ssu1g0837 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 28 301 IPR039657 -
Ssu1g0837 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 193 IPR027417 -
Ssu1g0837 328 Gene3D - 34 294 IPR027417 -
Ssu1g0837 328 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 28 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0837 Ssu-Chr1 18493924 18494910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0837 151 300 C2H2 Transcription Factor Family AT2G27760 32.203 1.76e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0837 K10760 - gmx:100812928 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0837 1 18493924 18494910 Ssu1g0837 1 18493924 18494910 ECH
Ssu6g0222 6 3511407 3512396 Ssu1g0837 1 18493924 18494910 PCT