Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0825 ATGCTTCCTGATCaaagaaaaaagTCATCTGTGGATGTGGACTTCTTTACTGAATACGGTGAAGGGAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGATACACACACCGGAGAAAAGgttgcaataaagaaaatcaatgacATATTTGAACATGTATCTGATGCCACTCGCATTCTTCGCGAGATTAAGCTTCTTAGACTTTTACGCCATCCAGATATTGTGGAGATCAAACATATTCTGTTACCTCCTTCTAGAAGGGAATTCAAAGATATATATGTTGTCTTCGAACTCATGGAATCTGATTTACATCAGGTCATCAAAGCTAATGATGATCTGACACCAGAGCATTACCAGTTTTTCCTGTATCAGCTTCTTCGAGGCTTGAAGTATATACACACAGCAAATGTTTTTCACCGTGATCTAAAGCCAAAAAACATATTAGCAAATGCTGACTGCAAACTGAAGATTTGCGACTTTGGTCTTGCCAGAGTGGCTTTCAATGATACTCCCACTGCTATTTTCTGGACAGATTATGTTGCAACAAGGTGGTATAGGGCTCCTGAGTTGTGTGGATCCTTTTTTTCCAAGTATACACCAGCTATAGACATATGGAGCATTGGCTGCATTTTTTCAGAACTTTTGACTGGAAAACCTCTTTTTCCTGGGAAGAATGTTGTTCATCAACTAGACCTTATGACTGATCTTCTTGGAACTCCATCTCTTGAAGCCATTGCTAGGGTACGAAATGAGAAAGCTCGGAGATATTTGAGCAGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCGCAGAAATTTCCTAATGCAGACCCCCTTGCTCTTCGTTTGCTGGAAAGAATGTTGGCATTTGAACCTAAGGATCGGCCTACTGCTGAAGAGGCTCTAGCGGATCCATATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAACCATCTGCTCAGCCAGTTACCAAGAtggaatttgaatttgagagaCGCCGGATAACAAAGGAAGATGTACGAGAGCTTATATATCGGGAGATTCTGGAGTACCATCCGAAGATGTTGAAGGAATTTCTAGAGGGAGCAGAGCCAACAGGTTTCATGTATCCAAGtgCTGTGGACCACTTCAAGAAGCAATTTGCATATCTCGAGGAGCATTACGGCAAAGGGGGAACTGTTACTCCACCTGAGAGGCAACATGCATCATTACCCAGACCTTGTGTGTTGTATTCAGACAACTCAATACAGAATACGGCTGAGGTTGCAGATGATCTATCCAAATGTTGCATCAAAGAAGTTGAGAAACAACCCGTAGATAGGAGTAGTGCTATCCCTATGTCTCGGCTTCCTTTACAAGCACCTCAAAATATTCAAGGTGTTGCTGCAAGGCCCGGAAAGGTTGTTGGTTCGGTAATGCGTTACAACAACTGTGGGGTAGCAGTGACGGCAGAGGCTGAACAGCGGAGGGTGGTCAGGAATCCGTCTGTTTCGGCTCAGTACGCTGCGTCGAGCTGTTCATATCCAAGGAGAAACCCAGGCTATAAAAATGAGAGGGCAGAGGATGATGGGATTGAAGGTTCAAATGGACTGCAGCCAAAGCCTCATTACATGGCAAGAAAAGTGGCTGCTGCTCAAGGTGGACCTGGTGGTCAGTGGTATTGA 1689 0.4269 MLPDQRKKSSVDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFSELLTGKPLFPGKNVVHQLDLMTDLLGTPSLEAIARVRNEKARRYLSSMRKKKPVPFSQKFPNADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLEGAEPTGFMYPSAVDHFKKQFAYLEEHYGKGGTVTPPERQHASLPRPCVLYSDNSIQNTAEVADDLSKCCIKEVEKQPVDRSSAIPMSRLPLQAPQNIQGVAARPGKVVGSVMRYNNCGVAVTAEAEQRRVVRNPSVSAQYAASSCSYPRRNPGYKNERAEDDGIEGSNGLQPKPHYMARKVAAAQGGPGGQWY 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0825 562 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0825 562 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Ssu1g0825 562 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 478 - -
Ssu1g0825 562 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0825 562 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g0825 562 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Ssu1g0825 562 MobiDBLite consensus disorder prediction 516 541 - -
Ssu1g0825 562 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Ssu1g0825 562 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Ssu1g0825 562 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 478 - -
Ssu1g0825 562 CDD STKc_TDY_MAPK 24 361 - -
Ssu1g0825 562 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0825 Ssu-Chr1 18151471 18157323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0825 1 562 MAP Kinase Gene Family AT5G19010 80.314 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Ssu1g0825 Pkinase 1.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0825 - K04371 gmx:100781957 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0825 1 18151471 18157323 Ssu1g0825 1 18151471 18157323 ECH
Ssu6g0236 6 3790210 3794077 Ssu1g0825 1 18151471 18157323 PCT