Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0821 ATGGCTTCCGTTGCTTTCAGAAACCTAAATTCTAAGCGCCTCCTTTTCTCTTTGCATTTCACGAATGCTTACCATTCACTCTCTCGGGGAACTTGCACCATATCCCAAAACTGCAATGCACCTTCATTGGGTCTTGTTTCTCTACGGAGATCCGTGGCAACTTTCACTCGAACAAAGCCCCATCTTAACGTGGGCACAATTGGGCATGTTGATCATGGAAAAACCACACTAACTGCTGCAATTACCAAGGTGCTAGCAGAAGAAGGTAAAGCCAAGGCTATTGCCTTTGAGGATATAGACAAGGCTCCTGAGGAGAAGAAGAGAGGAATTACTATTGCTACTGCTCATGTGGAGTATGAGACAGCAAAGAGGCACTATGCACATGTTGATTGCCCAGGACATGCAGACTATGTTAAGAACATGATTACTGGAGCTGCACAAATGGATGGTGGAATTCTTGTGGTTTCCGCTCCAGATGGGCCAATGCCTCAAACAAAGGAACATATACTTCTTGCTCGTCAGGTTGGTGTGCCATCATTGGTCTGCTTTCTAAATAAGGTTGATGCTGTTGATGATCCTGAGTTGCTTGAACTTGTGGAAATGGAGCTTCGTGAACTGCTTAATTTCTACAAATTTCCTGGTGATGAGATCCCAATTGTACGAGGTTCAGCCCTGTCTGCTTTGCAGGGGACTAATGAAGAACTTGGGAAGAAGGCTATCTTAAAACTAATGGATGCTGTGGATGAATACATTTCTGATCCTGTGCGGCAACTTGACAAGCCTTTCTTAATGCCAATAGAAGATGTTTTCTCAATTCAGGGGCGTGGAACTGTTGTGACTGGTCGTGTTGAACAAGGCACCATCAAAGTAGGTGAGGAGGTTGAAGTATTGGGACTAACACAGAGTGGACCTTTGAAGACTACTGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCGAGGGGAAGCTGGTGATAATGTGGGACTTCTTCTACGTGGTCTAAAGCGTGATGATGTACAACGTGGAATGGTCGTGACCAAGCCTGGTGCGTTGAAAACGTATAAGAAGTTTGAAGCAGAGATTTATGTCCTCTCAAAAGATGAAGGTGGCCGCCATACtgcttttttctctaattataagCCTCAGTTTTACTTGAGGACTGCAGATGTTACCGGAAAGGTGGAATTACCCGAAAGTGTTAAGATGGTTATGCCTGGTGATAACGTGACTGCAACTTTTGAGCTGATATCACCTGTTCCTCTTGAAATAGGACAAAGATTTGCTTTGAGAGAGGGAGGCAGAACAGTTGGTGCAGGAGTTGTCTCCAAAGTTATTTCCTAG 1344 0.4375 MASVAFRNLNSKRLLFSLHFTNAYHSLSRGTCTISQNCNAPSLGLVSLRRSVATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFEDIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRVEQGTIKVGEEVEVLGLTQSGPLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRDDVQRGMVVTKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYKPQFYLRTADVTGKVELPESVKMVMPGDNVTATFELISPVPLEIGQRFALREGGRTVGAGVVSKVIS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0821 447 Gene3D Translation factors 391 446 - -
Ssu1g0821 447 PANTHER ELONGATION FACTOR TU-RELATED 37 447 - -
Ssu1g0821 447 CDD EFTU_III 353 442 - -
Ssu1g0821 447 Gene3D - 51 254 IPR027417 -
Ssu1g0821 447 SUPERFAMILY Translation proteins 256 352 IPR009000 -
Ssu1g0821 447 Pfam Elongation factor Tu C-terminal domain 352 445 IPR004160 -
Ssu1g0821 447 TIGRFAM small_GTP: small GTP-binding protein domain 63 200 IPR005225 GO:0005525
Ssu1g0821 447 CDD EF_Tu 60 254 IPR041709 -
Ssu1g0821 447 Hamap Elongation factor Tu [tuf]. 50 447 IPR004541 GO:0003746|GO:0005525|GO:0006414
Ssu1g0821 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 277 IPR027417 -
Ssu1g0821 447 PRINTS GTP-binding elongation factor signature 143 154 IPR000795 GO:0003924|GO:0005525
Ssu1g0821 447 PRINTS GTP-binding elongation factor signature 107 115 IPR000795 GO:0003924|GO:0005525
Ssu1g0821 447 PRINTS GTP-binding elongation factor signature 180 189 IPR000795 GO:0003924|GO:0005525
Ssu1g0821 447 PRINTS GTP-binding elongation factor signature 127 137 IPR000795 GO:0003924|GO:0005525
Ssu1g0821 447 PRINTS GTP-binding elongation factor signature 63 76 IPR000795 GO:0003924|GO:0005525
Ssu1g0821 447 TIGRFAM EF-Tu: translation elongation factor Tu 51 446 IPR004541 GO:0003746|GO:0005525|GO:0006414
Ssu1g0821 447 CDD EFTU_II 262 350 IPR033720 -
Ssu1g0821 447 PANTHER ELONGATION FACTOR TU 37 447 - -
Ssu1g0821 447 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 100 115 IPR031157 -
Ssu1g0821 447 Gene3D Translation factors 257 387 - -
Ssu1g0821 447 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 59 255 IPR000795 GO:0003924|GO:0005525
Ssu1g0821 447 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 356 447 IPR009001 -
Ssu1g0821 447 Pfam Elongation factor Tu domain 2 276 347 IPR004161 GO:0005525
Ssu1g0821 447 Pfam Elongation factor Tu GTP binding domain 59 252 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0821 Ssu-Chr1 18131200 18135179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0821 57 445 Eukaryotic Initiation Factors Gene Family AT5G60390 30.115 6.80e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0821 K02358 - gmx:102667962 828.165