Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0814 ATGGGAATGTCTAGGGTGAAGTATGTAACTCAGTGGTACATGGGAGTTTGTGGTGTTCTTGTAAATGTTTGTGGCAAAGTTCATTATCAATCTCATTCTATGATTCAGAAGCCTTCTTCTCAATTTTCATTCAATGGGTTTGGAAGCATTTTTGGACATCATGGGTGGTCAAGACCCCTTATTGATCAACAACCTGTAATAGAGAACCTAACAATGAAAAGTTATCACAAAACATCACGAGGTAGTGTTAGGAGATTCGAAGTGGTGAAGACCATGCTGAATTCAGCAGCTAAAGAAGAAATCAGTGGATATTTGGTTAGTGGAATTACTCATTTGAAGACtaaccaaaaagaaacaaagcacCTTGACTTGTCCCTAAAGCTCTAG 387 0.3643 MGMSRVKYVTQWYMGVCGVLVNVCGKVHYQSHSMIQKPSSQFSFNGFGSIFGHHGWSRPLIDQQPVIENLTMKSYHKTSRGSVRRFEVVKTMLNSAAKEEISGYLVSGITHLKTNQKETKHLDLSLKL 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0814 128 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 28 128 IPR044246 GO:0009788
Ssu1g0814 128 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 28 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0814 Ssu-Chr1 17849599 17850685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0814 30 128 C2H2 Transcription Factor Family AT5G10970 33.036 5.81e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0814 - - gmx:100819663 145.206