Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0805 ATGATTGTAAAGGAGCATTCTGTCGGTACTGAACTGGCTATGAGTAATGCTAGTGGGGAGGAGGGAATAGATTTTTCTTGTGAGCCACACATAGGGTTAGAATTTGATACAGCAGATGATGCACTTAAGTTTTACACTTTGTATGCAAATCGAACGGGATTTAAAGTTCGGATTGGTCAGCTTTATCGATCAAGAACTGATGGGTCAGTTTCTTCTCGAAGATTTGTGTGCTTGAAGGAGGGACATCAACTCAGTTCAAGAACAGGCTGTCCAGCATTCATAAGGGTACAAATAAATGGTTCCGGGAAGTGGGTGATTGATCATTTTCATAAGGACCACAATCACAATCTTGAAATCAGTGGTGAAAATTGCACTCCAACATTGCAACAGAAGGGTGCTACAGCTATCAACTCTCTTACTGAGTTTCCTCGCAAGCCAAGAAAGAAATTGCTCGAAGAAGCTAATGATGAATCCTCTTGTCCATTTGGCATTATTGATTTCAAGCGTCTGAGAAAGGAAGAACATGAAGGACAGTCTGGGACTGAACCATATGTGGGTCAAGAGTTCAGTTCACCTAATGAAGCCTACCAATTTTATCATGCATATGCAGCGCATTTGGGTTTTGGAGTTCGAATTGGTCAATTGTTTCGTTCTAAGAATGATGGGTTGATCACATCCCGCAGATTTGTTTGCTCTAAAGAGGGGTTCCAGCACCCTTCAAGAGTTGGTTGTGGGGCTTATTTAAGGATTAAGAGACAGCCGTCGGGAAAGTGGATAGTGGACCGCCTTCGAAAAGACCATAACCATGATCTGGACTCTGGAAAGGAGGGCAGGGCAAAAAGTCTTCCTCCTGCTAATATTTTGACCGAAGAGGTAGATACTGGATTGGTAAATGGTGACTTATTTAGAATAGATAACTACCCTGTCCCTAGAGGAGGTAGGCAAAATCACATTAGAAGTGAGTGGTTCGGCATTCTTTTAGAGTATTTTCAATCAAGACAAGGCGAAGATACCGGATTCTTTTATGCTGTGGAAGTTGACAATGGTAATTGCATGAACATATTTTGGGCGGATGGCAGATCTAGATATTCATGTAGTCAGTTTGGTGATGTCCTTGTCTTAGACACGTCATACCGAAAAACTGTCTATTTGGTACCATTTGCTACTTTTGTTGGAGTCAACCATCACAAGCAACCTGTGCTTCTTGGATGTGCTCTAATTGCTGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCAGACATGGCTTAGGGCAATGTCTGGCCGGCAGCCTCTGACAGTTATCGCTGATCAAGACATTGCAGTCCAGAGGGCAATAGCAAAAGTCTTTCCTGTAACCCATCATCGCTTTTCTTTGTGGCAAATTAAGGCAAAGGAACAAGAGAACATGGGTCTGATGGGTAATGACTTTACAAAAGATTACAAAAAGTGTGTTTACCAGAGTCAGACAGTTGATGAATTTGACGCCACATGGAATGTCCTACTCAACAAATATGGATTGAAGGACAATGCTTGGCTAAAAGAAATGTATGAGAAGCGTGCATCTTGGGTTCCATTGTATTTAAAGGGCACATTTTTGGCTGGCATTCCCATGAATGAAAGCCTTGATTCATTCTTCGGTGCACTTTTAAATGCCCAGACACCTCTCATGGAGTTCATTCCTCGGTATGAAAGAGGTCTTGAGCGACGCCGtgaggaagaaagaaaagaggatTTTAATACTTCTAATTTTCAACCCATTTTGCAAACAAAAGAGCCAGTAGAAGAACAGTGTAGAAGGCTTTACACTCTTACTGTATTCAAAGTATTTCAAAAAGAGCTATTGCAGTGCTATAGCTATCTTGGgtttaaaatatttgaggaaGGGGGCCTGAGCAGATATTTGGTGCGTAGGGGTGGAAATGATATGGAGAAGCATGTAGTTACTTTCAATGCATCAAATCTCAGCATTAGTTGTAGCTGTCAGATGTTTGAATACGAAGGTGTTCTTTGTAGACATGTGTTGAGGGTTTTCCAGATACTGCAATTAAGAGAAGTTCCTTCTCGCTACATCTTACACCGATGGACAAGAAATGCCGAGGATGGTGTTTTTCCTGACATAGAATCATGGACTAGCTCTCAGGAACTAAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATAGAAACTGGTGCAACATCCATTGAAAAGTATAAACTTGCCTATGAAATTTTGCGGGAGGGTGGGAGAAAGCTTTGTTGGCACAGGTGA 2283 0.4087 MIVKEHSVGTELAMSNASGEEGIDFSCEPHIGLEFDTADDALKFYTLYANRTGFKVRIGQLYRSRTDGSVSSRRFVCLKEGHQLSSRTGCPAFIRVQINGSGKWVIDHFHKDHNHNLEISGENCTPTLQQKGATAINSLTEFPRKPRKKLLEEANDESSCPFGIIDFKRLRKEEHEGQSGTEPYVGQEFSSPNEAYQFYHAYAAHLGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPSGKWIVDRLRKDHNHDLDSGKEGRAKSLPPANILTEEVDTGLVNGDLFRIDNYPVPRGGRQNHIRSEWFGILLEYFQSRQGEDTGFFYAVEVDNGNCMNIFWADGRSRYSCSQFGDVLVLDTSYRKTVYLVPFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAMSGRQPLTVIADQDIAVQRAIAKVFPVTHHRFSLWQIKAKEQENMGLMGNDFTKDYKKCVYQSQTVDEFDATWNVLLNKYGLKDNAWLKEMYEKRASWVPLYLKGTFLAGIPMNESLDSFFGALLNAQTPLMEFIPRYERGLERRREEERKEDFNTSNFQPILQTKEPVEEQCRRLYTLTVFKVFQKELLQCYSYLGFKIFEEGGLSRYLVRRGGNDMEKHVVTFNASNLSISCSCQMFEYEGVLCRHVLRVFQILQLREVPSRYILHRWTRNAEDGVFPDIESWTSSQELKNLMLWSLRETASKYIETGATSIEKYKLAYEILREGGRKLCWHR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0805 760 SMART 26again6 657 684 IPR006564 GO:0008270
Ssu1g0805 760 Pfam SWIM zinc finger 652 679 IPR007527 GO:0008270
Ssu1g0805 760 Pfam FAR1 DNA-binding domain 197 271 IPR004330 -
Ssu1g0805 760 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Ssu1g0805 760 ProSiteProfiles Zinc finger SWIM-type profile. 646 682 IPR007527 GO:0008270
Ssu1g0805 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 23 122 - -
Ssu1g0805 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 147 756 - -
Ssu1g0805 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 23 122 IPR031052 GO:0006355
Ssu1g0805 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 147 756 IPR031052 GO:0006355
Ssu1g0805 760 Pfam MULE transposase domain 371 464 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0805 Ssu-Chr1 17524788 17527070 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu1g0805 MULE 1.4e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0805 - - gmx:100816656 1452.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0805 1 17524788 17527070 Ssu1g0805 1 17524788 17527070 ECH