Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0799 ATGCGAAGCCACCCTTTTTCCCTTTGGATCAAGGGCCAAAATGTCTCCACCTTTTGGTTTTGGTGGGGCCTTGTTTTGCTTCTCTTTCCAAACATGGGCTGTGTCCATGGCAAGTGCTGTACCCGTTACCCTTCACCATCAGTGGGTGGCTCTAGAGACTACAGAGAAGTTGGCCCTTACAGTGCTCAAAGGAAGCACATTCTCACTCAGAGTTCAATGCAATTTGTTCCTGTTCCTTCCCATAACTTCACTTTGGAATACTCTGTGCTCACTCAGAGGGGATATTATCCTGATTCACCtgataaagaaaaccaagataGTTTCTGCATTAGGACACAGTTTCAAGGCAATCCGAGTGTCCATTTCTTTGGTGTCTATGATGGGCATGGCGAATTTGGTGGCCAGTGTTCAAACTTTGTTAAGGATAGGTTGGTGGAAACATTGTCAAGTGACATTGCATTGTTGGAGGATCCTGTTAAGGCCTACACTTCTGCATTCTTGAGTACAAATGATGACTTGCATAAGAATGAGATTGATGATGCCATGAGTGGCACCACCGCAATTACGGTGCTGGTTATTGGGGACACCCTTTACGTGGCTAATGTTGGGGATTCGAGAGCAGTGCTGGCTGTTAAGGATGGGAACCGGGTTGTTGCTGAGGACTTGTCCTCTGATCAGACACCGTTTAGGAGAGATGAGTATGAGAGAGTGAAGCTTTGTGGGGCGAGGGTGTTGAGTGTTGATCAGGTGGAAGGGCACAAGGATCCGGATATTCAGACTTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCTAGGTTGTGGGTTCAGGATGGGATGGTTCCTGGAGCTGCTTTTACAAGGAGTGTAGGGGATAAGTTGGCTGAGACTATTGGTGTCATTGCTGTTCCTGAGGTGTCAACGGTTCGGCTTACACCGAATCatcttttctttgttgttgccAGTGATGGTGTATTTGAGTTCCTATCGAGCCAAACTGTTGTTGATATGGCAGCAAGTTATTCAGATCCCCGCGATGCATGTGCTGCCATTGCTGGAGAGTCTTATAAACTATGGTTAGGACATGAGGGCCGAACAGATGATATAACAATTATCATTGTTCAGATCAAAGGCCTGTCTAATtCGGGTACATCTGGACTTGGATCAGGTGAAATCAATGTCAGTACTGTAATGAGGACCAAGAGCAAGAGGGCGAAGGGAGCATCTGAGATATCTGCTACTACTGGGTTAGATGTTTATTGTTCTGTCAGGAACGGCTTCTCTGATTTACAGTCCTGTCCACAGCATGTGGTCTCAACTAGAAGCCCAGCCATAGTGGTCCCATCTCCAGCATTCCAAACACCAATTGAATTGTGA 1377 0.4561 MRSHPFSLWIKGQNVSTFWFWWGLVLLLFPNMGCVHGKCCTRYPSPSVGGSRDYREVGPYSAQRKHILTQSSMQFVPVPSHNFTLEYSVLTQRGYYPDSPDKENQDSFCIRTQFQGNPSVHFFGVYDGHGEFGGQCSNFVKDRLVETLSSDIALLEDPVKAYTSAFLSTNDDLHKNEIDDAMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRVVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQDGMVPGAAFTRSVGDKLAETIGVIAVPEVSTVRLTPNHLFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLGHEGRTDDITIIIVQIKGLSNSGTSGLGSGEINVSTVMRTKSKRAKGASEISATTGLDVYCSVRNGFSDLQSCPQHVVSTRSPAIVVPSPAFQTPIEL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0799 458 CDD PP2Cc 102 376 IPR001932 -
Ssu1g0799 458 SUPERFAMILY PP2C-like 73 378 IPR036457 -
Ssu1g0799 458 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 57 452 - -
Ssu1g0799 458 Pfam Protein phosphatase 2C 104 351 IPR001932 -
Ssu1g0799 458 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Ssu1g0799 458 SMART PP2C_4 82 374 IPR001932 -
Ssu1g0799 458 ProSiteProfiles PPM-type phosphatase domain profile. 86 376 IPR001932 -
Ssu1g0799 458 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 57 452 - -
Ssu1g0799 458 Gene3D - 77 378 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0799 Ssu-Chr1 17404960 17408149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0799 32 381 PP2C-type Phosphatase Gene Family AT3G06270 71.671 1.73e-180 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0799 - - aprc:113872580 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0799 1 17404960 17408149 Ssu1g0799 1 17404960 17408149 ECH
Ssu6g0254 6 4072538 4086218 Ssu1g0799 1 17404960 17408149 PCT