Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0792 ATGGCATCATTGGTTGCCAGTGGTAGCAGTCAAATGGCTCTTTCAGTTTCTGTCCAAGAAAAAGGAAgtagaaataagagaaaattcaGGGCTGATCCACCCTTAGGGGAGCCAAACAAGATTATTCCTTCACCTCAACATGAAAGCCTCAGCTATGAATTCTCTGctgaaaagtttgaaataacCGCAGGTCATGGGCAAGCTAGTGCTTCTGACATATGTAGGGTAAGCCAAGATCATTCTGATGGGTTGAAGCTTGACCTTGGATTGTCTAGTTCAATAGCTTCACCTGAGGTCAGGCTTAGCCAACCTAAGGAGGAACTTGAGGTGGATGAATTTAATGATGCTGATTGGGGTGATTACAGTGAAGCCGAATTGGAAGAACTTGTCCTGAGCAATTTGGACACTATTTTCAAGAGTGCAATTAAACAAATTGTTGCTTGTGGCTACACTGAAGACGTTGCTACAAAGGCCATCTTAAGGTCTGGCATCTGTTATGGATGTAAAGATGTTGTGTCTAATATAGTTGATAATGGTTTAGCATTTCTTAGAAATGGCCAAGAGATCAATCCTTCGCGAGAGCACTATTTTGAAGATTTAGTGCAGCTAGAGAAGTATATTTTGGCTGAATTGGTTTGTGTTCTTCGGGAGGTTAGGCCATTCTTCAGTACTGGCGATGCAATGTGGTGTTTGCTAATTTGTGACCTGAATGTGTCACATGCTTGTGCAATGGATGGTGACCCTTCAAGTAGTTTAGGTAGTGGTGGCATTGCTGATGGTTGTTCTTCTGTTCAGACTGAAtcacaatcaaaattagaaacaaaagcTCCTGAATTGAGTCTTCCAAGTCCTTGTAAATCAGTTCCCTCAGGTTCTAAATCTGAGAAATCCTCTGTGGCAGGAAATACTGGTTTGGACAACTCAAAGAATTCTCAAATTCTTGTTGGACTCTCGGAGAAAGAGGGTGCTAATTCTGCAAGTGATTCTATTGATAAATCATCTAGTACTACTGGGACATCTCAATCTCCCTTGGTGGAAGAAAAGTGTGGGAGTGCTAGAAAGATCCATTCCAGTACAACTAGGAGAGACTACATTCTTCGACAGAAGTCATTTCATGTGGAAAAAGGTTATCGGACATATGGGTCTAAAGGGTCTTCAAGAGGAGGAAGGCTGAATGGCTTAAATGGATTAATCTTggataaaaaacttaaatctgTATCTGAATCTACTACCATAAACTTAAAGAGTGCATCCTTTAACATAAGTAAGGCAATGGGAGTTGATGTGACACAAGACAATTTGAATGCTGATTTCTCATCTAATGATGGACCTACCCCCACTGCATTTAGCCTGGATTCTACTGATACTGTTTCTCAGCCATTTGATACTTCATCTTCAGTACATGAAGCAAATGCTATACCTGCAGCTGGTAGCCCAGATGCATTATCAGCTACAGATACtgatctttctctttctttgtctTCAAAAAGTAAGTCTCCTTCAACACCTATCTGCTGCAACAATGAGGCACCTAATAGTAGTTGTGTGGGGATACCGTATGACAAGTCCCTTGGGCAGTGGATACCGCAAGATAGAAAGGATGAGATGATTTTGAAACTGGTTCCAAGGGTTCGGGAGCTGCAAAATCAGCTTCAAGAATGGACAGAGTGGGCAAATCAGAAGGTTATGCAGGCTGCTCGTCGGCTGAGTAAGGACAAGGCTGAGCTTAAGACACTAAGGCAAGAGAAGGATGAAGTTGAACGTCTTAAGAAAGAGAAGCAATCTCTAGAGGAAAACACTATGAAGAAGATTTCCGAGATGGAAAATGCCTTGTCTAAAGCAAGTGTGCAGGTAGAACGAACTAATGCTGATGTCCGGAAGCTGGAGGTGGAGAATGCTGTGCTGAGGAAAGAGATGGAGGCTGCTAAGTTACGAGCGGCAGAATCAGCCACAAGCTGTCAAGAGGTCTcaaggagagaaaagaagacCCAAATGAAGTTTCAATCATGGGAGAAGCAGAAATCCTTGTTTCAAGAAGAGGTAATGACTGAAAAACACAAATTGGTTCAGTTGCAGCAAGAATTAGAGCAAGCTAAAGTGCACCAGGAGCAAGTTGAGGCTAGGCGGCAGCAGGCAGCAAAGGCAAAAGAAGAACTCCTCCTACAGGCCAGTtctataagaaaagaaagggaaCAAATTGAGGAGTCTGCAAAATCGAAGGAGGATATGATCAAACTGAAAGCAGAGGAGAATCTGCAGAGGTACAGAGATGACATCCAGaaacttgaaaaagaaattgcacAACTGAGACAGAAGACCGACTCCTCCAAAATTGCTGCACTTAGAAGGGGAATTGATGGAAGCTATGCCAACAGCTTTATGGACATGAAAAATGGCACTGCTCGGGAAGAATCTCGGGCCACTTTAATCTCAGAACTGGTTACAAATTTAAATGACTACTCTTTGACAGGGGGTGTTAAACGGGAAAGAGAATGTGTGATGTGCCTTTCTGAGGAGATGTCTGTTGTATTCCTCCCATGTGCTCATCAGGTTGTTTGCACAACATGCAATGAGCTCCATGAGAAACAAGGTATGCAAGACTGTCCTTCTTGCAGGAGCCCCATCCAGAAACGTATTTCTGTTCGTTTTGCccgtacataa 2661 0.4051 MASLVASGSSQMALSVSVQEKGSRNKRKFRADPPLGEPNKIIPSPQHESLSYEFSAEKFEITAGHGQASASDICRVSQDHSDGLKLDLGLSSSIASPEVRLSQPKEELEVDEFNDADWGDYSEAELEELVLSNLDTIFKSAIKQIVACGYTEDVATKAILRSGICYGCKDVVSNIVDNGLAFLRNGQEINPSREHYFEDLVQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDLNVSHACAMDGDPSSSLGSGGIADGCSSVQTESQSKLETKAPELSLPSPCKSVPSGSKSEKSSVAGNTGLDNSKNSQILVGLSEKEGANSASDSIDKSSSTTGTSQSPLVEEKCGSARKIHSSTTRRDYILRQKSFHVEKGYRTYGSKGSSRGGRLNGLNGLILDKKLKSVSESTTINLKSASFNISKAMGVDVTQDNLNADFSSNDGPTPTAFSLDSTDTVSQPFDTSSSVHEANAIPAAGSPDALSATDTDLSLSLSSKSKSPSTPICCNNEAPNSSCVGIPYDKSLGQWIPQDRKDEMILKLVPRVRELQNQLQEWTEWANQKVMQAARRLSKDKAELKTLRQEKDEVERLKKEKQSLEENTMKKISEMENALSKASVQVERTNADVRKLEVENAVLRKEMEAAKLRAAESATSCQEVSRREKKTQMKFQSWEKQKSLFQEEVMTEKHKLVQLQQELEQAKVHQEQVEARRQQAAKAKEELLLQASSIRKEREQIEESAKSKEDMIKLKAEENLQRYRDDIQKLEKEIAQLRQKTDSSKIAALRRGIDGSYANSFMDMKNGTAREESRATLISELVTNLNDYSLTGGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMQDCPSCRSPIQKRISVRFART 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0792 886 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g0792 886 Coils Coil 681 743 - -
Ssu1g0792 886 MobiDBLite consensus disorder prediction 268 357 - -
Ssu1g0792 886 Coils Coil 562 645 - -
Ssu1g0792 886 MobiDBLite consensus disorder prediction 436 471 - -
Ssu1g0792 886 Pfam Family of unknown function (DUF6592) 133 244 IPR046527 -
Ssu1g0792 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 816 882 IPR013083 -
Ssu1g0792 886 MobiDBLite consensus disorder prediction 1 46 - -
Ssu1g0792 886 SUPERFAMILY RING/U-box 827 879 - -
Ssu1g0792 886 PANTHER OS05G0141500 PROTEIN 4 885 IPR046934 -
Ssu1g0792 886 Coils Coil 745 779 - -
Ssu1g0792 886 Pfam Zinc finger, C3HC4 type (RING finger) 829 877 - -
Ssu1g0792 886 ProSiteProfiles Zinc finger RING-type profile. 832 872 IPR001841 -
Ssu1g0792 886 MobiDBLite consensus disorder prediction 483 506 - -
Ssu1g0792 886 MobiDBLite consensus disorder prediction 436 506 - -
Ssu1g0792 886 PANTHER OS05G0141500 PROTEIN 4 885 - -
Ssu1g0792 886 MobiDBLite consensus disorder prediction 285 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0792 Ssu-Chr1 17340036 17343469 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0792 - - gmx:100818439 1409.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0792 1 17340036 17343469 Ssu1g0792 1 17340036 17343469 ECH
Ssu6g0255 6 4086221 4086529 Ssu1g0792 1 17340036 17343469 PCT