Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0774 ATGGGAAAGCGCCTCCAAAACGTTACTTCCTCCGGCGGCGAGATGCAGCCGGAAAAGCGGACCCGGCGGAGCAAAACCATTCGCTCTTGCAACTCTCCTTGTCCTCCGTTTCTCTCTGCTCATTCCACTTTCTCCTGGTTCGAAGAAGACATTTGGACAGAGATTACTAAGTTTCTGGACGGAAAATCTCTGGTGATGCTGGCAGCCACGAGCCGATGGTTCCGCCGGGCCATCATGGATGACGGTATATGGAAGTTCGTGTGCCTGCGTGATCTTCAGGTCCCACCCCCGGAACGCGTGGCATTCAGGTGGTGCAAGCTGTACACCTCAGCCTTTGATGGAAGCCACTCCTACATGTTCCGTCAACAAGAGAAACATATAGATTGGATGCGTATTGGCgccttttcttttgattcttctGTAGCCGTCCTGACAGAGAGACCGACTTTTCCGGGAAAGATAAGGAAAGGAGAAACCATGGAAAATATGCTGCGGTCTCAAGGTTGTTGCGTGCTAGACAATGTTAAATCTGGAATCTGGATAGCTGACCTGCAGCTTGTAAGATGCCCGGTTTGTGACCTCAATACGTGCGATGGAACGATGCAGACGTTAGATGCAAGGCACATAGAACTATTCCTCTGTGAAGGCTACCGAAATGGGAGCTGGGATTACCAGCTTGTAGGATCTCATGATATCAAAAAACGGGCAGATGGGGCTGCTGGAGCCATTTTTGACTTCAAACACCTGGAGGATTCTTCAACGTCGGCGGTATTTGATTACAAGTCATGGATTGGGAGACCAAATGACTGGCAACCCAAGGCCATGATTGCTTTCCATGCCGTAGCTGTGAACACTAACTTACAAGAAAATGAAGGTGAGCAACATCCTTATTGTGGCTATCCTGGTTTCAACTTAATTTGTACGAATAATAGCAAAACAGTGCTAAAACTTCCTTACTCTGGGGAATTTTATGTGCGCAATATTAACTACCTCACACAAAAGATACAAGTCTACGACCCTGATGATTGCCTCCCCAAACGTCTTCTGAGCCTCAATGTCTCAGCTGTCCCTTCACTGAACTTGACCAATCCATTGCCTGAGTCTTGCTATGGTATTACAAGGTTTTCAGTCCCAGTTGCAAGGCCAGAGCAGCAGTATGAGAAGAATCACAGAGATGAGCTTAGTGAAGATCTTCGATTAACATGGGATAAACCTGACTGCAGATATTGTGAATCACGAGAACAATTATGTGGGTTTGATCgaaacaacaacaatcaacttTTCTGTTTCTCTTACCAAACAGACACTTCACAATCACAAGGTGGAGTCCAAGTTTTTAGAATCATCACATTATGCATTGCTGGACCAGCAGCCGTCTTTGCAATTGTGATGGCATGCTGTGTGTGCTGCAAGGACAGAATAGCCAACATTCGTAACAATACCACTCCTCAGAGGTCTGCACCAGCTACAACATCACCAGCACCGCAAGTTGTGACTGCGGGTCTGGACGAGTCCACGATTGAGTCTTACGAGAAGGTAGTGCTTGGAGAGAGTCGACGAGTTCCTGGACCCAACGGTGGATGCTGTTGGATATGCTTGTCGGAGTACAATAGCAAAGAGACAATAAGATGCATTCCTGAATGCAAACACTGCTTCCATGCTAATTGCATAGACGAGTGGCTTCGCATCAACACCACATGCCCAGTTTGCCGCAACTCTCCCTCCCCTTCTCCTCTTTTTGTTACGTCCATTAACCCCTAA 1761 0.4645 MGKRLQNVTSSGGEMQPEKRTRRSKTIRSCNSPCPPFLSAHSTFSWFEEDIWTEITKFLDGKSLVMLAATSRWFRRAIMDDGIWKFVCLRDLQVPPPERVAFRWCKLYTSAFDGSHSYMFRQQEKHIDWMRIGAFSFDSSVAVLTERPTFPGKIRKGETMENMLRSQGCCVLDNVKSGIWIADLQLVRCPVCDLNTCDGTMQTLDARHIELFLCEGYRNGSWDYQLVGSHDIKKRADGAAGAIFDFKHLEDSSTSAVFDYKSWIGRPNDWQPKAMIAFHAVAVNTNLQENEGEQHPYCGYPGFNLICTNNSKTVLKLPYSGEFYVRNINYLTQKIQVYDPDDCLPKRLLSLNVSAVPSLNLTNPLPESCYGITRFSVPVARPEQQYEKNHRDELSEDLRLTWDKPDCRYCESREQLCGFDRNNNNQLFCFSYQTDTSQSQGGVQVFRIITLCIAGPAAVFAIVMACCVCCKDRIANIRNNTTPQRSAPATTSPAPQVVTAGLDESTIESYEKVVLGESRRVPGPNGGCCWICLSEYNSKETIRCIPECKHCFHANCIDEWLRINTTCPVCRNSPSPSPLFVTSINP 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0774 586 CDD RING-H2_EL5_like 529 571 - -
Ssu1g0774 586 MobiDBLite consensus disorder prediction 1 15 - -
Ssu1g0774 586 PANTHER F-BOX PROTEIN RMF 16 293 - -
Ssu1g0774 586 SUPERFAMILY RING/U-box 528 574 - -
Ssu1g0774 586 Gene3D - 37 130 - -
Ssu1g0774 586 ProSiteProfiles Zinc finger RING-type profile. 529 571 IPR001841 -
Ssu1g0774 586 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g0774 586 Pfam Ring finger domain 529 571 IPR001841 -
Ssu1g0774 586 SMART ring_2 529 570 IPR001841 -
Ssu1g0774 586 Pfam Wall-associated receptor kinase C-terminal 374 431 IPR032872 -
Ssu1g0774 586 SUPERFAMILY F-box domain 42 108 IPR036047 GO:0005515
Ssu1g0774 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 491 576 IPR013083 -
Ssu1g0774 586 Pfam Wall-associated receptor kinase galacturonan-binding 295 339 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0774 Ssu-Chr1 16989190 16997039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0774 294 576 C3H Transcription Factor Family AT2G25410 38.957 3.73e-67 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0774 - - gmx:100797890 565.459