Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0773 ATGATAATTAAGCGCACGATGAAAACCGAGACGCCGAACGTGAAACGGTGTAAGATGGAGGAGGCCGATTCCGAGAATGCGACTTCGGCGATTCAGAAGAAGCGTAGGGTTAACGGGTTTTACTCTCTCGGCATGCCCGGCGACGCTGAGTATTTCAGCAGCGGTTCCGGCTCTTGGAGCAGCGAAGGATCGTAttggggtggtggtggtgaggtTCAGTCCAATTCAAATTCCGTGCCGTTTAATCGCAAAACGGTGCCGCTTAATCGCAAAACGGCGAAGGGAGCGCGTCTGCCTCCGCTGCTGCGGTCCTCGCGTGGGCGCGTCCAGAAGCTTCCGTCGAGGTTCAATGACTCGGTTCTTGACGCGTGGAAGAAagcggaggaggaggaggaaaacGGAGACTCGAGCTTCGAAGATGATGATAAGAGTTTTGTGGAGGATGGTAGGCGTGGCATTGGTGTAAAAGTGGAGAAGAGTGATAGTGTGTGTTATTCTTCTAGGACTGTTAAGGCTGAGAGTAATACGTCTGGGATTACTTTTGAGGGTGTGGACCAAAAGCCCAATGGGGAGAAGAGGAAAGAGGTTTACAAGCCGGAGGATTTTGCTTTGGGGGACATAGTTTGGGCTAAGTGTGGGAAGAGGTATCCGGCTTGGCCTGCTGTGGTGATTGATCCTGTCTTGGAGGCTCCCAACTCTGTACTCAGCTGTTGCGTTCCCGGCACGCTTTGCGTGATGTTTTTTGGTTATTCGAAGAATGGAACTCAAAGGGATTACGCTTGGGTGAAGCAGGGAATGGTATTCCCCTTCTTGGAATTCATGGACAGGTTTCAGGGGCAGACCCGGTTGTACAAGAGCAAACCGAGTGACTTTCGCATGGCACTGGAGGAGGCTATGCTGGCAGAAGATGGTGTTCTGGAATCACATTTGGGAGGAGAGGAAGTAGCTGATGTAGAACATCGTCGTGATGGACTTATGGAGGCCATGGGTTCGTATGTTGATCAGGAATATTATGGCCAGGATCAGGAAACAAGGTATTGCGCTGGCTGTGGTCTGATGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAATTGTGCACCCCAATTTTATTGCAAACATTGTGCTAAGttacaaaaatcaaaacaatattgTGGCATTTGCAAAAGGATTTGGCATCATTCAGATGGTGGGAATTGGGTGTGTTGTGATGGTTGTAATGTGTGGGTGCATGCTGAGTGTGATAAAATTTCTGGTAAACTTTTCAAGGATTTGGAAAATACAGATTACTATTGTCCAGATTGCAAGAAATTACCAGCATCACAAGCATTCAAGTCGAAAATCAAATCAATAGAGAGTAGCCAAAAATCTATGATACCTGAGAAAGTATTGGTGGTGTGCAATGGCATGGAAGGAATTTACATCCCAAAGCTTCATCTAGTCATGTGCAAGTGTGGCTCTTGTGGTTCAAGGAAGCAGACACTCAGTGAATGGGAAAAACATACAGGTTGCAGAGCGAAAAAGTGGAAACATAGTGTGAAAGTGAAAAGCACAATGCTACCACTGGAAAAATGGATGGCAGAACACATTCCACTAGATGGAATACCCCAGCAGTTAGATCAACAGCAGGTGCTGGCCTTTTTGCAAGAGAAGTATGAGCCAGTTAATGCAAAGTGGACAACAGAAAGATGTGCTGTTTGCAGATGGGTTGAAGATTGGgaagataacaaaattattatttgtaacaGATGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTTTGTCCAGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTTGAAATGTTGTGGGTTCATGTAACATGTGCTTGGTTTCGACCTCAAGTTGTTTTCCAAAACCATGAGGCCATGGAACCTGCCAGAGGAATCCTTAAAATTCCTCCTAATTCCTTTGTGAAGACTTGTGTGATCTGTAAACAGAGCCATGGTTCCTGTATAACTTGTTGCAAGTGTGCTACTTattttcatgtgatgtgtgcaTCAAGGGCAGGATATACAATGGAATTGCATTCCATAGAGAAGAATGGAACTCAAATAACAAAGAAGCTAATATATTGTGCAATTCACAGGGTCCCAAATCCAGATTCAGTACTGGTCGTACACACACCCCTGGGGGTTTTCTCTCCCAGAACTTCACTTCAAAATCAGAAGGGATGCTTCAGGGGATCAAGGCTAATTTCATCAAAGTATATAGAGCTTAATGAATTGTCAACCACTGAAAATGACATAGTTGAGTCGCTGTCTGCTGCCAGATGTCGTGTGTACCGAAGGTCTCCTAATAAGAGGGCTGATGTGCCAATAATTCACTTGCTGAGGGGACCCAGCCTTCATTCTTTGGGTGCAATAACTAGGTTGAACCACTACAAGGATGCTGAAGAATCTAAAGTTTTCACTTCTTTCAAGGAACGTCTTCACCATTTACGGAAAACGGAAAAACTTAGAGTTTGCTTTGGAAAATCGGGCATTCATGGATGGGGTCTCTTTGCACGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGTGGTGTGCGGGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAATACCGTTCAGAAGGCAAAGATTGCTATcTGTTCAAGATCAGTGAGGAAGTGGTAGTTGACGCAACGCACAGAGGCAATATAGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTATGCGAGGATTATGAGTCTGGGAGATCAGGAGAGCCGGATTGTTCTTATTGCCAAGACCAATGTTTCTGCTGGTGAAGAATTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAACTGAAAGTTCCCTGCCTTTGCAAAGCCCCCAATTGTAGAAGATTTATGAATTAG 2991 0.4356 MIIKRTMKTETPNVKRCKMEEADSENATSAIQKKRRVNGFYSLGMPGDAEYFSSGSGSWSSEGSYWGGGGEVQSNSNSVPFNRKTVPLNRKTAKGARLPPLLRSSRGRVQKLPSRFNDSVLDAWKKAEEEEENGDSSFEDDDKSFVEDGRRGIGVKVEKSDSVCYSSRTVKAESNTSGITFEGVDQKPNGEKRKEVYKPEDFALGDIVWAKCGKRYPAWPAVVIDPVLEAPNSVLSCCVPGTLCVMFFGYSKNGTQRDYAWVKQGMVFPFLEFMDRFQGQTRLYKSKPSDFRMALEEAMLAEDGVLESHLGGEEVADVEHRRDGLMEAMGSYVDQEYYGQDQETRYCAGCGLMLPCKTMKKIKDSNCAPQFYCKHCAKLQKSKQYCGICKRIWHHSDGGNWVCCDGCNVWVHAECDKISGKLFKDLENTDYYCPDCKKLPASQAFKSKIKSIESSQKSMIPEKVLVVCNGMEGIYIPKLHLVMCKCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSTMLPLEKWMAEHIPLDGIPQQLDQQQVLAFLQEKYEPVNAKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPQVVFQNHEAMEPARGILKIPPNSFVKTCVICKQSHGSCITCCKCATYFHVMCASRAGYTMELHSIEKNGTQITKKLIYCAIHRVPNPDSVLVVHTPLGVFSPRTSLQNQKGCFRGSRLISSKYIELNELSTTENDIVESLSAARCRVYRRSPNKRADVPIIHLLRGPSLHSLGAITRLNHYKDAEESKVFTSFKERLHHLRKTEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGVRVRRSVADLREAKYRSEGKDCYLFKISEEVVVDATHRGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRRFMN 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0773 996 SUPERFAMILY SET domain 850 992 IPR046341 -
Ssu1g0773 996 CDD PHD_ATX3_4_5_like 564 610 IPR042011 -
Ssu1g0773 996 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 441 IPR013083 -
Ssu1g0773 996 ProSiteProfiles PWWP domain profile. 204 273 IPR000313 -
Ssu1g0773 996 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 996 - -
Ssu1g0773 996 ProSiteProfiles Zinc finger PHD-type profile. 562 613 IPR019787 -
Ssu1g0773 996 Pfam SET domain 865 970 IPR001214 GO:0005515
Ssu1g0773 996 MobiDBLite consensus disorder prediction 52 93 - -
Ssu1g0773 996 Pfam PWWP domain 205 301 IPR000313 -
Ssu1g0773 996 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 996 IPR025780 -
Ssu1g0773 996 Gene3D SET domain 832 996 IPR046341 -
Ssu1g0773 996 ProSitePatterns Zinc finger PHD-type signature. 565 610 IPR019786 -
Ssu1g0773 996 ProSiteProfiles SET domain profile. 854 971 IPR001214 GO:0005515
Ssu1g0773 996 SMART set_7 854 977 IPR001214 GO:0005515
Ssu1g0773 996 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 732 IPR013083 -
Ssu1g0773 996 SMART PWWP_4 202 271 IPR000313 -
Ssu1g0773 996 SUPERFAMILY FYVE/PHD zinc finger 383 440 IPR011011 -
Ssu1g0773 996 MobiDBLite consensus disorder prediction 1 30 - -
Ssu1g0773 996 Pfam PHD-finger 385 438 IPR019787 -
Ssu1g0773 996 Gene3D - 191 307 - -
Ssu1g0773 996 MobiDBLite consensus disorder prediction 53 85 - -
Ssu1g0773 996 Gene3D - 455 543 IPR010919 -
Ssu1g0773 996 CDD PHD_TCF19_like 386 436 - -
Ssu1g0773 996 CDD SET_SETD1-like 843 992 - -
Ssu1g0773 996 ProSiteProfiles Post-SET domain profile. 980 996 IPR003616 -
Ssu1g0773 996 Pfam PHD-zinc-finger like domain 618 730 - -
Ssu1g0773 996 ProSiteProfiles Zinc finger PHD-type profile. 383 439 IPR019787 -
Ssu1g0773 996 SMART PHD_3 675 731 IPR001965 -
Ssu1g0773 996 SMART PHD_3 564 611 IPR001965 -
Ssu1g0773 996 SMART PHD_3 385 437 IPR001965 -
Ssu1g0773 996 SMART PostSET_3 980 996 IPR003616 -
Ssu1g0773 996 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 559 613 IPR013083 -
Ssu1g0773 996 SUPERFAMILY Tudor/PWWP/MBT 195 320 - -
Ssu1g0773 996 Pfam PHD-finger 577 611 - -
Ssu1g0773 996 SUPERFAMILY FYVE/PHD zinc finger 563 627 IPR011011 -
Ssu1g0773 996 ProSiteProfiles Extended PHD (ePHD) domain profile. 616 731 IPR034732 -
Ssu1g0773 996 PANTHER PHD FINGER PROTEINS 1 996 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0773 Ssu-Chr1 16955420 16963793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0773 565 717 C2H2 Transcription Factor Family AT3G14740 35.185 8.36e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu1g0773 zf-HC5HC2H_2 2.9e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0773 - - gmx:100793624 1801.56