Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0763 ATGGAACCCCAATCTCTCTCTCCTCCCCACAACATGGACGACGCCGAAGACCCTTGGGACTTATCCTACCTCCTCGACTTCAGCCTCGACGACGACTCCCTCCCTCTCCCCTCGAACGACCCTCCCGAGATCCCAAACGACAGGGTCCGAAAGCGCGACCCGAGACTCGCCTGCTCCAACTTTCTCGCGGGTCGGGTCCCCTGCGCCTGCCCCGAACTCGACGCCAAGCTCGACGACGCCGGCCTACCCGGGAAGAAACGCGCCCGCACCGCCCGTGCCTCCGCGTCCGCCCGCTGCCAGGTCCCCGGCTGCGAAGCCGATATCTCCGAACTCAAGGGCTACCACCGCCGCCACAGAGTCTGCCTGCGCTGCGCGAACGCCGCCACCGTCGTCCTCCACGGCGAGCCCAAGAGATACTGCCAGCAGTGCGGAAAGTTTCACGTTTTATCGGATTTCGACGAAGGTAAACGAAGCTGCAGAAGGAAATTAGAGCGCCACAACACCAGGAGGCGGAGAAAGCCTCCGGCGGTTTCCGGAGGTGCTGCTCATAATAGCGAGCTTCAAGCTGTTACTCAGAACGGGGAAACAAATTATGACGCGGAAGCAGAAAAAGATTGTTCAAATTTGAGTACCGAGATCAATGATAAAGAAGTGTCCCCGGATCGTGAAGATGAACCGGCTCCTGAAACTCAGAATGTCAATAGTGATAGTGTTGTGTCTCTGGGCGTTTCGGGCGAGATGCGAGTGTATAGTGGGAAAGATGTTTCGAACACTTCGAATTCGCCTTCGTATTGTGACAATAAGAGTGCCTATTCGTCTATGTGCCAAACAGGTCGGATTTCGTTTAAGCTTTATGACTGGAATCCTGCGGAGTTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAGCATGCCTTTAGAGTTGGAGGGATATATCCGCCCTGGGTGTACAATCCTGACAATTTTTATTGCAATGCCTAACATTATGTGGATTAATTTACTGAAAGACTCTTTGGAATATGTGCGTGATATTGTTGCTCCTGGAAAGATGCTATCTGGAAGAGGCACCACACTAGTTCATCTGAATGACATGATCTTCCGTGTTACGAAAGGTGGAACTTTTGTGACGAAAATTGAGGTAAACATGCAGGCACCGAGGCTTCACTATGTTCACCCCACATACTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAGTTTCGGCTTCTCGTATCATTTTCTGGAAAATATCTGGAATGTGAGTATTGTGTACCGTCTCCACATAACCGGACCGAAGACAAAATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATATGTCCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTTATTCCTGTACTCATTGGGGATAAACATATTTGCAGTGAAATGAAGACACTGCAGCAAAAATTAGATGTATCTCTCCTTTCTAAACAATTCCGGTCTGCATCTGGTCTTTCTATCTGCAGCTCATGTGAAACTTTTGCTCTTAGTCACACAACATCATCAGACTTACTTTTAGATGTAGCATGGTTGCTTAAGGACACTACTTCTGAAAATTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATATTGTCATTTGTTGGATTTTCTGATATGCAATGATTCAACATTCATTTTGGGAAAAATATTACCAAATTTGATAATCTTGACAGAAAGCATGAAATCCAATATTGTGATTAATGGGACGAGTGATGTTGACCTGACACAACTCCTGAATCACATACATAATGCTGGAAATGTCATATATCAGAAACATCAGAACGGTGGAGGTATAATTGTGCACTCTGAAACGGAAGGCTTTAAACTTGCTCAGGGCTGCTCCCAAGATAACAAGTTATCAGTTGCAGTTAACAGTCAGGGTATCCTGTCGAGAGCAGATGTAAAGTGGGGAGTACTGAAAAGTCCAACTTCTAATgacaaaaatgaaagaagatCACTTTTGAAGAGGGATATTATAATGGACGTGGAACAGTTGCCTGAAAGATATGGCCGTCGATGTTTGGGCAGGGGATTCTTGACCTCTCGACCAGCTATTTTTGTGATTGTTTCGGTTGCTGTGTGTCTTGGGGTATGTGTTGCCGTCCTTCATCCTGGGAGGGTTAGTGAGTTAGCAGTATCCGTTAGAAGGTGTTTGTTTAACCATTag 2274 0.4622 MEPQSLSPPHNMDDAEDPWDLSYLLDFSLDDDSLPLPSNDPPEIPNDRVRKRDPRLACSNFLAGRVPCACPELDAKLDDAGLPGKKRARTARASASARCQVPGCEADISELKGYHRRHRVCLRCANAATVVLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPPAVSGGAAHNSELQAVTQNGETNYDAEAEKDCSNLSTEINDKEVSPDREDEPAPETQNVNSDSVVSLGVSGEMRVYSGKDVSNTSNSPSYCDNKSAYSSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPLELEGYIRPGCTILTIFIAMPNIMWINLLKDSLEYVRDIVAPGKMLSGRGTTLVHLNDMIFRVTKGGTFVTKIEVNMQAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLECEYCVPSPHNRTEDKISCAFDNQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKHICSEMKTLQQKLDVSLLSKQFRSASGLSICSSCETFALSHTTSSDLLLDVAWLLKDTTSENFDRVMTASQIQRYCHLLDFLICNDSTFILGKILPNLIILTESMKSNIVINGTSDVDLTQLLNHIHNAGNVIYQKHQNGGGIIVHSETEGFKLAQGCSQDNKLSVAVNSQGILSRADVKWGVLKSPTSNDKNERRSLLKRDIIMDVEQLPERYGRRCLGRGFLTSRPAIFVIVSVAVCLGVCVAVLHPGRVSELAVSVRRCLFNH 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0763 757 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 18 755 - -
Ssu1g0763 757 Pfam SBP domain 99 173 IPR004333 GO:0003677
Ssu1g0763 757 Gene3D - 94 160 IPR036893 GO:0003677|GO:0005634
Ssu1g0763 757 MobiDBLite consensus disorder prediction 163 187 - -
Ssu1g0763 757 ProSiteProfiles Zinc finger SBP-type profile. 96 173 IPR004333 GO:0003677
Ssu1g0763 757 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 755 IPR044817 GO:0003677
Ssu1g0763 757 SUPERFAMILY SBT domain 97 176 IPR036893 GO:0003677|GO:0005634
Ssu1g0763 757 MobiDBLite consensus disorder prediction 204 229 - -
Ssu1g0763 757 MobiDBLite consensus disorder prediction 204 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0763 Ssu-Chr1 16724508 16732949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0763 46 751 SBP-box Gene Family AT5G18830 49.724 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu1g0763 SBP 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0763 - - gmx:100819905 1261.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0763 1 16724508 16732949 Ssu1g0763 1 16724508 16732949 ECH